View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20930_low_1 (Length: 624)

Name: NF20930_low_1
Description: NF20930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20930_low_1
NF20930_low_1
[»] chr3 (20 HSPs)
chr3 (1-616)||(19968634-19969248)
chr3 (56-604)||(20019104-20019650)
chr3 (1-616)||(19742462-19743062)
chr3 (485-605)||(14855518-14855638)
chr3 (97-212)||(14855397-14855507)
chr3 (431-548)||(19957487-19957604)
chr3 (428-516)||(19813661-19813749)
chr3 (428-513)||(19819953-19820038)
chr3 (446-522)||(19964071-19964147)
chr3 (428-599)||(20035159-20035339)
chr3 (446-507)||(20026277-20026338)
chr3 (446-513)||(19839870-19839937)
chr3 (559-599)||(19819858-19819898)
chr3 (428-548)||(19833212-19833332)
chr3 (559-599)||(19839775-19839815)
chr3 (531-614)||(19963958-19964041)
chr3 (181-224)||(20005718-20005761)
chr3 (281-309)||(19820153-19820181)
chr3 (559-599)||(19957427-19957467)
chr3 (281-309)||(20035017-20035045)
[»] chr8 (1 HSPs)
chr8 (281-309)||(22655301-22655329)
[»] chr5 (1 HSPs)
chr5 (428-515)||(27473200-27473287)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 19969248 - 19968634
Alignment:
1 agttaatcatgataaccagaataaattgaggtccaaaaatatcaaaattgctattttagataaaaataaagatgttaaggattatatccacaaaactgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
19969248 agttaatcatgataaccagaataaattgaggtccaaaataatcaaaatttctattttagataaaaataaagatgttaatgattatatccacaaaactgaa 19969149  T
101 atactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaaacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
19969148 atactttctaatgcacaagatcttcattaaaagcaatccataatttgctatatttcatatatttaaatcagtagataaagtgataaacacaacaaaacca 19969049  T
201 gtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattga 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19969048 gtagcctaattcacattgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattga 19968949  T
301 aagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagtaaactattacacataattagcnnnnnnntgtggtttacaaatc-a 399  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||  ||  |||       ||||||||||||||| |    
19968948 aagcaactataacaagctgcacaaaaaaaggggactactagcaacaaactgaagtaaactattacac--aaccagcaaaaaaatgtggtttacaaatcaa 19968851  T
400 aaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcct 499  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
19968850 aaacgtactatggcttagctttggctccaacaatttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttcttgatcct 19968751  T
500 gttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatca 599  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
19968750 gttttcaacatcaaatgcgatgtctaatatcaaaggaccgacactttcctctttctcaccattcctatcacaaaatagactcttgatttcatcttcatca 19968651  T
600 agcacatgtgatgatgt 616  Q
    |||||||  ||||||||    
19968650 agcacatccgatgatgt 19968634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 56 - 604
Target Start/End: Original strand, 20019104 - 20019650
Alignment:
56 ttagataaaaataaagatgttaaggattatatccacaaaactgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatactt 155  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
20019104 ttagatcaaaataaagatgttaatgattatatccacaaaactgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatattt 20019203  T
156 cagatatttaaatcagtacataaagtgataaacacaacaaaaccagtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagta 255  Q
    || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
20019204 catatatttaaatcagtagataaagtgataatcacaacaaaaccagtagcctaattcacattgatattttcatgatcagcaaaatatcccaagttcagca 20019303  T
256 ccagttcatattaaatattaatcacctactaattactacaattgaaagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
20019304 ccagttcatattaaatattaatcacctactaattactacaattgaaagcaactataacaagctgcacaaaaaaaggggactactagcaacaaactgaagt 20019403  T
356 aaactattacacataattagcnnnnnnntgtggtttacaaatcaaaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatctt 455  Q
    ||||||||||||  ||  |||       |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
20019404 aaactattacac--aaccagcaaaaaaatgtggtttacaaatcaaaacttactatggcttagctttggctccaacaatttcaaccttagagccaaatctt 20019501  T
456 gcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttct 555  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
20019502 gcttgattgagcttagcaacctctctttcaagtttctggattctgttttcaacatcaaatgcgatgtctaatatcaaaggaccaacactttcctctttct 20019601  T
556 caccatttctatcacaaaatagactctttatttcatcttcatcaagcac 604  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
20019602 caccatttctatcacaaaatagactcttgatttcatcttcatcaagcac 20019650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 19742462 - 19743062
Alignment:
1 agttaatcatgataaccagaataaattgaggtccaaaaatatcaaaattgctattttagataaaaataaag-atgttaaggattatatccacaaaactga 99  Q
    |||||||||| ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||| |||  ||||| | ||||||||||||| || |||    
19742462 agttaatcattataaccagaataaattgaggttcaaaataatcaaaatttctattttagataaaaaaaaaatatgtttatgattatatccacataattga 19742561  T
100 aatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaaacc 199  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||| ||| |||||||||||||| |||||||| |    
19742562 aatact--ctaatgcacaagatcttcattaaaagcaatccataatttgcaatacataaaatatttgaatcggtagataaagtgataaacgcaacaaaatc 19742659  T
200 agtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattg 299  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||| || |||||| ||||| | |||||     ||||         ||||||    
19742660 agtagcctaattcactttgatatttccatgatcagcaaaatatcccaagttcggtgccagtttatatttattatta-----ctac---------caattg 19742745  T
300 aaagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagtaaactattacacataattagcnnnnnnn-tgtggtttacaaatc 398  Q
    |||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
19742746 aaagcaactatagcaagctgcacaaaaaa-ggggactactagcaacaaactgaagtaaactattacacataattagcaaaaaaaatgtggtttacaaatc 19742844  T
399 aaaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcc 498  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||  ||||    
19742845 aaaacgtattatggcttagctttggctccaacaatttcaaccttagagccaaatcttgcttgtttgagcttcacaacctctctttcgagtttctcaatcc 19742944  T
499 tgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatc 598  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
19742945 tgttttcaacatcaaatgcaatgtctaagatcgaaggaccaacactttcctctttctcaccatttccatcacaaaatagactatttatttcatcttcatc 19743044  T
599 aagcacatgtgatgatgt 616  Q
    |||||||| |||||||||    
19743045 aagcacatctgatgatgt 19743062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 485 - 605
Target Start/End: Original strand, 14855518 - 14855638
Alignment:
485 aagtttctggatcctgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactcttt 584  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
14855518 aagtttctggatcctgttttcagtatcaaatgcgatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactcttg 14855617  T
585 atttcatcttcatcaagcaca 605  Q
    |||||||||||||||||||||    
14855618 atttcatcttcatcaagcaca 14855638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 14855397 - 14855507
Alignment:
97 tgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaa 196  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||     |||||| ||||||||||||||||||||||    
14855397 tgaaataatttctaatgcacaagatcttcattaaaagcaatccataatttgctatatttcaaatat-----tcagtagataaagtgataaacacaacaaa 14855491  T
197 accagtagcctaattc 212  Q
    | ||||||||||||||    
14855492 atcagtagcctaattc 14855507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 548
Target Start/End: Complemental strand, 19957604 - 19957487
Alignment:
431 attttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaatatc 530  Q
    ||||||||||||   |||||||||||||| ||| ||||||| |||| |||||||||| ||||  ||||||||||||| ||||||| | ||||||| | |     
19957604 attttcaaccttttggccaaatcttgcttctttaagcttagaaaccactctttcaagcttctcaatcctgttttcaagatcaaataccatgtctagtgta 19957505  T
531 aaaggaccaacactttcc 548  Q
    |||||| |||||||||||    
19957504 aaaggatcaacactttcc 19957487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 19813749 - 19813661
Alignment:
428 aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatg 516  Q
    |||||||||||||||   |||||||||||||| ||||||||||| || | |||||||||||||||  ||||||||||||| ||||||||    
19813749 aacattttcaacctttcggccaaatcttgcttctttgagcttagaaaacactctttcaagtttctcaatcctgttttcaagatcaaatg 19813661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 513
Target Start/End: Complemental strand, 19820038 - 19819953
Alignment:
428 aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaa 513  Q
    ||||||||||| |||   |||||||||||||| ||||||||||| |||| |||||||||| |||| |||||||||||||| |||||    
19820038 aacattttcaaacttttggccaaatcttgcttctttgagcttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 19819953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 522
Target Start/End: Complemental strand, 19964147 - 19964071
Alignment:
446 gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgt 522  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||| || ||||||||||  |||||| ||||||    
19964147 gccaaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaagttcaaatcctatgt 19964071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 599
Target Start/End: Original strand, 20035159 - 20035339
Alignment:
428 aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaat 527  Q
    |||||||||||||||   |||||||||||||| ||| ||||||| |||| |||||||||| || |  || |||||||||| ||||||| | ||||||| |    
20035159 aacattttcaaccttttggccaaatcttgcttctttaagcttagaaaccactctttcaagcttttccattctgttttcaagatcaaattccatgtctagt 20035258  T
528 atcaaaggaccaacactttcc---------tctttctcaccatttctatcacaaaatagactctttatttcatcttcatca 599  Q
     | |||||  ||||| |||||         || ||  || ||||||||||| ||||| |||||||||||||||||||||||    
20035259 gtaaaaggctcaacattttccccattgatgtcattgacatcatttctatcataaaatggactctttatttcatcttcatca 20035339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 20026277 - 20026338
Alignment:
446 gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaa 507  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||| || ||||||||||    
20026277 gccaaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaa 20026338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 19839937 - 19839870
Alignment:
446 gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaa 513  Q
    |||||||||||||| ||| || |||| |||| |||||||||| |||| |||||||||||||| |||||    
19839937 gccaaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa 19839870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19819898 - 19819858
Alignment:
559 catttctatcacaaaatagactctttatttcatcttcatca 599  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
19819898 catttctatcataaaatagactcttgatttcatcttcatca 19819858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 548
Target Start/End: Complemental strand, 19833332 - 19833212
Alignment:
428 aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaat 527  Q
    |||||||||||||||   |||||||||| ||| ||| ||||||| || | |||||||||| ||||  || |||||||||| |||||||   ||||||| |    
19833332 aacattttcaaccttttggccaaatctttcttctttaagcttagaaaacactctttcaagcttctcaattctgttttcaagatcaaatatcatgtctagt 19833233  T
528 atcaaaggaccaacactttcc 548  Q
     | |||||  |||||||||||    
19833232 gtaaaaggctcaacactttcc 19833212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19839815 - 19839775
Alignment:
559 catttctatcacaaaatagactctttatttcatcttcatca 599  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
19839815 catttctatcataaaatagactcttgatttcatcttcatca 19839775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 19964041 - 19963958
Alignment:
531 aaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatcaagcacatgtgatgat 614  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||| |||| || ||| |  ||||||||  ||||| |||||||    
19964041 aaaggaccaacactatcctctttttcaccatctctatcacagaatggactattgattcctgcttcatcacccacatttgatgat 19963958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 20005718 - 20005761
Alignment:
181 tgataaacacaacaaaaccagtagcctaattcacaatgatattt 224  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||    
20005718 tgataaacacaacaaaaacagtagcctaattaacattgatattt 20005761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 19820181 - 19820153
Alignment:
281 ctactaattactacaattgaaagcaacta 309  Q
    |||||||||||||||||||||||||||||    
19820181 ctactaattactacaattgaaagcaacta 19820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19957467 - 19957427
Alignment:
559 catttctatcacaaaatagactctttatttcatcttcatca 599  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
19957467 catttctatcataaaatggactcttgatttcatcttcatca 19957427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 20035017 - 20035045
Alignment:
281 ctactaattactacaattgaaagcaacta 309  Q
    |||||||||||||||||||||||||||||    
20035017 ctactaattactacaattgaaagcaacta 20035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 22655301 - 22655329
Alignment:
281 ctactaattactacaattgaaagcaacta 309  Q
    |||||||||||||||||||||||||||||    
22655301 ctactaattactacaattgaaagcaacta 22655329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 515
Target Start/End: Complemental strand, 27473287 - 27473200
Alignment:
428 aacattttcaaccttagagccaaatcttgcttgtttgagcttagc-aacctctctttcaagtttctggatcctgttttcaacatcaaat 515  Q
    |||| ||||||||||   |||||||||||||| ||| |||||||  ||||| | ||||||| ||||| ||||||||||||| |||||||    
27473287 aacagtttcaaccttttggccaaatcttgcttctttaagcttagagaaccttt-tttcaagcttctgaatcctgttttcaagatcaaat 27473200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University