View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20930_low_1 (Length: 624)
Name: NF20930_low_1
Description: NF20930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20930_low_1 |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 19969248 - 19968634
Alignment:
| Q |
1 |
agttaatcatgataaccagaataaattgaggtccaaaaatatcaaaattgctattttagataaaaataaagatgttaaggattatatccacaaaactgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19969248 |
agttaatcatgataaccagaataaattgaggtccaaaataatcaaaatttctattttagataaaaataaagatgttaatgattatatccacaaaactgaa |
19969149 |
T |
 |
| Q |
101 |
atactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19969148 |
atactttctaatgcacaagatcttcattaaaagcaatccataatttgctatatttcatatatttaaatcagtagataaagtgataaacacaacaaaacca |
19969049 |
T |
 |
| Q |
201 |
gtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattga |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19969048 |
gtagcctaattcacattgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattga |
19968949 |
T |
 |
| Q |
301 |
aagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagtaaactattacacataattagcnnnnnnntgtggtttacaaatc-a |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| | |
|
|
| T |
19968948 |
aagcaactataacaagctgcacaaaaaaaggggactactagcaacaaactgaagtaaactattacac--aaccagcaaaaaaatgtggtttacaaatcaa |
19968851 |
T |
 |
| Q |
400 |
aaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcct |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19968850 |
aaacgtactatggcttagctttggctccaacaatttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttcttgatcct |
19968751 |
T |
 |
| Q |
500 |
gttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatca |
599 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19968750 |
gttttcaacatcaaatgcgatgtctaatatcaaaggaccgacactttcctctttctcaccattcctatcacaaaatagactcttgatttcatcttcatca |
19968651 |
T |
 |
| Q |
600 |
agcacatgtgatgatgt |
616 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
19968650 |
agcacatccgatgatgt |
19968634 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 56 - 604
Target Start/End: Original strand, 20019104 - 20019650
Alignment:
| Q |
56 |
ttagataaaaataaagatgttaaggattatatccacaaaactgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatactt |
155 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20019104 |
ttagatcaaaataaagatgttaatgattatatccacaaaactgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatattt |
20019203 |
T |
 |
| Q |
156 |
cagatatttaaatcagtacataaagtgataaacacaacaaaaccagtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagta |
255 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20019204 |
catatatttaaatcagtagataaagtgataatcacaacaaaaccagtagcctaattcacattgatattttcatgatcagcaaaatatcccaagttcagca |
20019303 |
T |
 |
| Q |
256 |
ccagttcatattaaatattaatcacctactaattactacaattgaaagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20019304 |
ccagttcatattaaatattaatcacctactaattactacaattgaaagcaactataacaagctgcacaaaaaaaggggactactagcaacaaactgaagt |
20019403 |
T |
 |
| Q |
356 |
aaactattacacataattagcnnnnnnntgtggtttacaaatcaaaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatctt |
455 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20019404 |
aaactattacac--aaccagcaaaaaaatgtggtttacaaatcaaaacttactatggcttagctttggctccaacaatttcaaccttagagccaaatctt |
20019501 |
T |
 |
| Q |
456 |
gcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttct |
555 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20019502 |
gcttgattgagcttagcaacctctctttcaagtttctggattctgttttcaacatcaaatgcgatgtctaatatcaaaggaccaacactttcctctttct |
20019601 |
T |
 |
| Q |
556 |
caccatttctatcacaaaatagactctttatttcatcttcatcaagcac |
604 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20019602 |
caccatttctatcacaaaatagactcttgatttcatcttcatcaagcac |
20019650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 19742462 - 19743062
Alignment:
| Q |
1 |
agttaatcatgataaccagaataaattgaggtccaaaaatatcaaaattgctattttagataaaaataaag-atgttaaggattatatccacaaaactga |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| ||||| | ||||||||||||| || ||| |
|
|
| T |
19742462 |
agttaatcattataaccagaataaattgaggttcaaaataatcaaaatttctattttagataaaaaaaaaatatgtttatgattatatccacataattga |
19742561 |
T |
 |
| Q |
100 |
aatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaaacc |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||| ||| |||||||||||||| |||||||| | |
|
|
| T |
19742562 |
aatact--ctaatgcacaagatcttcattaaaagcaatccataatttgcaatacataaaatatttgaatcggtagataaagtgataaacgcaacaaaatc |
19742659 |
T |
 |
| Q |
200 |
agtagcctaattcacaatgatattttcatgatcagcaaaatatcccaagttcagtaccagttcatattaaatattaatcacctactaattactacaattg |
299 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||| ||||| | ||||| |||| |||||| |
|
|
| T |
19742660 |
agtagcctaattcactttgatatttccatgatcagcaaaatatcccaagttcggtgccagtttatatttattatta-----ctac---------caattg |
19742745 |
T |
 |
| Q |
300 |
aaagcaactataacaagctgcacnnnnnnnggggactactagcaacaaactgaagtaaactattacacataattagcnnnnnnn-tgtggtttacaaatc |
398 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19742746 |
aaagcaactatagcaagctgcacaaaaaa-ggggactactagcaacaaactgaagtaaactattacacataattagcaaaaaaaatgtggtttacaaatc |
19742844 |
T |
 |
| Q |
399 |
aaaacgtactatggcttagctttggctgcaacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcc |
498 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
19742845 |
aaaacgtattatggcttagctttggctccaacaatttcaaccttagagccaaatcttgcttgtttgagcttcacaacctctctttcgagtttctcaatcc |
19742944 |
T |
 |
| Q |
499 |
tgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatc |
598 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
19742945 |
tgttttcaacatcaaatgcaatgtctaagatcgaaggaccaacactttcctctttctcaccatttccatcacaaaatagactatttatttcatcttcatc |
19743044 |
T |
 |
| Q |
599 |
aagcacatgtgatgatgt |
616 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
19743045 |
aagcacatctgatgatgt |
19743062 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 485 - 605
Target Start/End: Original strand, 14855518 - 14855638
Alignment:
| Q |
485 |
aagtttctggatcctgttttcaacatcaaatgctatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactcttt |
584 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14855518 |
aagtttctggatcctgttttcagtatcaaatgcgatgtctaatatcaaaggaccaacactttcctctttctcaccatttctatcacaaaatagactcttg |
14855617 |
T |
 |
| Q |
585 |
atttcatcttcatcaagcaca |
605 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14855618 |
atttcatcttcatcaagcaca |
14855638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 14855397 - 14855507
Alignment:
| Q |
97 |
tgaaatactttctaatgcacaagatcttcattaaaagcaatccataatttgctatacttcagatatttaaatcagtacataaagtgataaacacaacaaa |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
14855397 |
tgaaataatttctaatgcacaagatcttcattaaaagcaatccataatttgctatatttcaaatat-----tcagtagataaagtgataaacacaacaaa |
14855491 |
T |
 |
| Q |
197 |
accagtagcctaattc |
212 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
14855492 |
atcagtagcctaattc |
14855507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 548
Target Start/End: Complemental strand, 19957604 - 19957487
Alignment:
| Q |
431 |
attttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaatatc |
530 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||||| |||| |||||||||| |||| ||||||||||||| ||||||| | ||||||| | | |
|
|
| T |
19957604 |
attttcaaccttttggccaaatcttgcttctttaagcttagaaaccactctttcaagcttctcaatcctgttttcaagatcaaataccatgtctagtgta |
19957505 |
T |
 |
| Q |
531 |
aaaggaccaacactttcc |
548 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
19957504 |
aaaggatcaacactttcc |
19957487 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 19813749 - 19813661
Alignment:
| Q |
428 |
aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatg |
516 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
19813749 |
aacattttcaacctttcggccaaatcttgcttctttgagcttagaaaacactctttcaagtttctcaatcctgttttcaagatcaaatg |
19813661 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 513
Target Start/End: Complemental strand, 19820038 - 19819953
Alignment:
| Q |
428 |
aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaa |
513 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||| |||| |||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
19820038 |
aacattttcaaacttttggccaaatcttgcttctttgagcttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa |
19819953 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 522
Target Start/End: Complemental strand, 19964147 - 19964071
Alignment:
| Q |
446 |
gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgt |
522 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||| ||||| || |||||||||| |||||| |||||| |
|
|
| T |
19964147 |
gccaaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaagttcaaatcctatgt |
19964071 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 599
Target Start/End: Original strand, 20035159 - 20035339
Alignment:
| Q |
428 |
aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaat |
527 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||| |||| |||||||||| || | || |||||||||| ||||||| | ||||||| | |
|
|
| T |
20035159 |
aacattttcaaccttttggccaaatcttgcttctttaagcttagaaaccactctttcaagcttttccattctgttttcaagatcaaattccatgtctagt |
20035258 |
T |
 |
| Q |
528 |
atcaaaggaccaacactttcc---------tctttctcaccatttctatcacaaaatagactctttatttcatcttcatca |
599 |
Q |
| |
|
| ||||| ||||| ||||| || || || ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20035259 |
gtaaaaggctcaacattttccccattgatgtcattgacatcatttctatcataaaatggactctttatttcatcttcatca |
20035339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 20026277 - 20026338
Alignment:
| Q |
446 |
gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaa |
507 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||| ||||| || |||||||||| |
|
|
| T |
20026277 |
gccaaatcttgcttctttaagcttagcaacctctccttcaagattctgaattctgttttcaa |
20026338 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 19839937 - 19839870
Alignment:
| Q |
446 |
gccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaa |
513 |
Q |
| |
|
|||||||||||||| ||| || |||| |||| |||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
19839937 |
gccaaatcttgcttctttaagtttagaaaccactctttcaagcttctcgatcctgttttcaagatcaa |
19839870 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19819898 - 19819858
Alignment:
| Q |
559 |
catttctatcacaaaatagactctttatttcatcttcatca |
599 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
19819898 |
catttctatcataaaatagactcttgatttcatcttcatca |
19819858 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 548
Target Start/End: Complemental strand, 19833332 - 19833212
Alignment:
| Q |
428 |
aacattttcaaccttagagccaaatcttgcttgtttgagcttagcaacctctctttcaagtttctggatcctgttttcaacatcaaatgctatgtctaat |
527 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||| ||||||| || | |||||||||| |||| || |||||||||| ||||||| ||||||| | |
|
|
| T |
19833332 |
aacattttcaaccttttggccaaatctttcttctttaagcttagaaaacactctttcaagcttctcaattctgttttcaagatcaaatatcatgtctagt |
19833233 |
T |
 |
| Q |
528 |
atcaaaggaccaacactttcc |
548 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
19833232 |
gtaaaaggctcaacactttcc |
19833212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19839815 - 19839775
Alignment:
| Q |
559 |
catttctatcacaaaatagactctttatttcatcttcatca |
599 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
19839815 |
catttctatcataaaatagactcttgatttcatcttcatca |
19839775 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 19964041 - 19963958
Alignment:
| Q |
531 |
aaaggaccaacactttcctctttctcaccatttctatcacaaaatagactctttatttcatcttcatcaagcacatgtgatgat |
614 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||| ||| |||| || ||| | |||||||| ||||| ||||||| |
|
|
| T |
19964041 |
aaaggaccaacactatcctctttttcaccatctctatcacagaatggactattgattcctgcttcatcacccacatttgatgat |
19963958 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 20005718 - 20005761
Alignment:
| Q |
181 |
tgataaacacaacaaaaccagtagcctaattcacaatgatattt |
224 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
20005718 |
tgataaacacaacaaaaacagtagcctaattaacattgatattt |
20005761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 19820181 - 19820153
Alignment:
| Q |
281 |
ctactaattactacaattgaaagcaacta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19820181 |
ctactaattactacaattgaaagcaacta |
19820153 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 19957467 - 19957427
Alignment:
| Q |
559 |
catttctatcacaaaatagactctttatttcatcttcatca |
599 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
19957467 |
catttctatcataaaatggactcttgatttcatcttcatca |
19957427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 20035017 - 20035045
Alignment:
| Q |
281 |
ctactaattactacaattgaaagcaacta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20035017 |
ctactaattactacaattgaaagcaacta |
20035045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 22655301 - 22655329
Alignment:
| Q |
281 |
ctactaattactacaattgaaagcaacta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22655301 |
ctactaattactacaattgaaagcaacta |
22655329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 515
Target Start/End: Complemental strand, 27473287 - 27473200
Alignment:
| Q |
428 |
aacattttcaaccttagagccaaatcttgcttgtttgagcttagc-aacctctctttcaagtttctggatcctgttttcaacatcaaat |
515 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||| ||||||| ||||| | ||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
27473287 |
aacagtttcaaccttttggccaaatcttgcttctttaagcttagagaaccttt-tttcaagcttctgaatcctgttttcaagatcaaat |
27473200 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University