View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20930_low_5 (Length: 294)
Name: NF20930_low_5
Description: NF20930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20930_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 102 - 277
Target Start/End: Original strand, 33970151 - 33970327
Alignment:
| Q |
102 |
aaagaaaattcaactaaatgcattaattagcctccccaaaagacaagttaataaaatggtccgtgaagtgtttggtcaaaacaaaaatgatccgtgaagt |
201 |
Q |
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| T |
33970151 |
aaagaaaattcaactaaatgcattaattagcctccccaaaagacaagttaataaaatggtccgtgaagtgtttggtcaaaacaaaaatgatccgtgaagt |
33970250 |
T |
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| Q |
202 |
gaatgaacacatttcctcaaagatcatatc-aaatgtatatgaaaaatgttaaccagtatcttcgggataatggtta |
277 |
Q |
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| T |
33970251 |
gaatgaatacatttcctcaaacatcatatcaaaatgtatatggaaaatgttaactagtatcttcgggacaatggtta |
33970327 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33970062 - 33970122
Alignment:
| Q |
1 |
gtacttacatcacataattatgaggtgatagcaacattcaaaaggacacaaattctttctt |
61 |
Q |
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| T |
33970062 |
gtacttacatcacataattatgaggtgatagcaacattcaaaaggacacaaattctttctt |
33970122 |
T |
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