View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20933_high_1 (Length: 635)
Name: NF20933_high_1
Description: NF20933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20933_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 247 - 618
Target Start/End: Complemental strand, 11472373 - 11472002
Alignment:
| Q |
247 |
ccatttgataaatgtgtcgcattgttaaaggcctaaccaactttccaagttgagctaattcctttagataacaactaatagaattaaaatacttcatttc |
346 |
Q |
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| T |
11472373 |
ccatttgttaaatgtgtcgcattgttaaaggcctaaccaactttccaagttgagctatttcctttagatcacaactaatagaattaaaatacttcatttc |
11472274 |
T |
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| Q |
347 |
ttactgacattacattagtccgagtagaattgaactcgaatctcttaaacaatgtctcggagtttaaccatgtagattggagaaatatggttgaagacaa |
446 |
Q |
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| T |
11472273 |
ttgctgacattacattagtccgaatggaattgaactcgaatctcttaaacaatgtctcggagtttagccatgtagattgaagaaatatggttgaagacaa |
11472174 |
T |
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| Q |
447 |
cactaaacatgggcaaccacgttccctatcatagattaatcatcgacaaagtcgatagttactttgcaccaataacacaattaccaagtagggctacttg |
546 |
Q |
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| T |
11472173 |
cactaaacatgggcaaccatgttccttatcatagattaatcatcgacaaagtcgataattactttgcaccaataacacaattaccaagtagggctacttg |
11472074 |
T |
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| Q |
547 |
cttaaagcaaattttgagagaatattttgcttcagttaaagtgttatgttaacaagtgcggcactaattaag |
618 |
Q |
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| T |
11472073 |
cttaaagcaaattttgagaaaatattttgctttagttaaagtgttatgctaacaagtgcggcactaattaag |
11472002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 11472594 - 11472479
Alignment:
| Q |
11 |
cagagacttacaaaggaaatgaggtatcaattagtccacccttcaaatatcctatcaactatttgattatattattttcttaccacaaattcaagctagt |
110 |
Q |
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| T |
11472594 |
cagagacttacaaaggaaatgaggtatcaattagtccacccttcaaatatcctatcaactatttcattatattattttcttaccacaaattcaagctagt |
11472495 |
T |
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| Q |
111 |
ttgttcatatttgaac |
126 |
Q |
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| T |
11472494 |
ttgttcatatttgaac |
11472479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 11472404 - 11472374
Alignment:
| Q |
201 |
tgttattgcaaagagctaaagttggttgttt |
231 |
Q |
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| T |
11472404 |
tgttattgcaaagagctaaagttggttgttt |
11472374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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