View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20933_high_2 (Length: 417)
Name: NF20933_high_2
Description: NF20933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20933_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 43989390 - 43989777
Alignment:
| Q |
15 |
cagagaagaagaataaggaaaaggtgagggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaaca |
114 |
Q |
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| T |
43989390 |
cagagaagaagaataaggaaaaggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaaca |
43989489 |
T |
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| Q |
115 |
tgaggaattcnnnnnnngctgagacacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtggtcgatttaca |
214 |
Q |
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| T |
43989490 |
tgaggaattctttttttgctgagacacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtagtcgatttaca |
43989589 |
T |
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| Q |
215 |
atagaaaa-aattgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttga |
313 |
Q |
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| T |
43989590 |
atagaaaaaaattgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttga |
43989689 |
T |
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| Q |
314 |
gttggtttgtcaggttcaatgaattcatcatctgggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaag |
401 |
Q |
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| T |
43989690 |
gttggtttgtcaggttcaatgaattcatcatctgggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaag |
43989777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 43918590 - 43918528
Alignment:
| Q |
19 |
gaagaagaataaggaaaaggtgagggacgacatgatcgtaagtcaaagaaggagaacaaggca |
81 |
Q |
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| T |
43918590 |
gaagaagaataaggagaaggcatgggacgacatgatcgtaggtcgaaggaggagaagaaggca |
43918528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 8831036 - 8831116
Alignment:
| Q |
226 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttac |
306 |
Q |
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| T |
8831036 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac |
8831116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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