View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20933_low_6 (Length: 237)

Name: NF20933_low_6
Description: NF20933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20933_low_6
NF20933_low_6
[»] chr4 (1 HSPs)
chr4 (1-154)||(37991590-37991743)
[»] chr1 (3 HSPs)
chr1 (60-152)||(26068195-26068287)
chr1 (60-119)||(28975616-28975674)
chr1 (60-119)||(21274682-21274741)
[»] chr5 (1 HSPs)
chr5 (60-119)||(6378689-6378747)
[»] chr3 (1 HSPs)
chr3 (60-119)||(48817588-48817647)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 37991743 - 37991590
Alignment:
Q  1 tataaatttatgaagtaaaactaccgtagaagttcccttgnnnnnnnnnnnnnnnnnnnattattgcttttgttggaccaatgaaaatttgccaagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||                   ||||||| ||||||||||||||| |||||||||||||||||    
T  37991743 tataaatttatgaagtaaaactaccgtagaagttcccttgttttttttgttttgtttttattattgtttttgttggaccaatcaaaatttgccaagtcaa 37991644  T
Q  101 gagtggtgggaagggtgtacaatagaaggtgtgtctatttataattttccattt 154  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||    
T  37991643 gagtggttggaagggtgtagaatagaaggtgtgtctatctataattttccattt 37991590  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 26068195 - 26068287
Alignment:
Q  60 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgtacaatagaaggtgtgtctatttataattttccat 152  Q
    |||||||||||| |||||||||| |||||||||||| |||  |||||||||||||||||| ||   || |||||||||| |||| ||| ||||    
T  26068195 attattgcttttattggaccaataaaaatttgccaaatcagaagtggtgggaagggtgtataaataaaagtgtgtctatctatactttcccat 26068287  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 28975674 - 28975616
Alignment:
Q  60 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 119  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||    
T  28975674 attattgcttttgttggaccaataaaagtttgccaagt-aagagtggtggaaagggtgta 28975616  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 21274682 - 21274741
Alignment:
Q  60 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 119  Q
    |||||||||||| ||||| |||| |||||||||||| |||  ||||||||||| ||||||    
T  21274682 attattgcttttattggatcaataaaaatttgccaaatcagaagtggtgggaatggtgta 21274741  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 6378689 - 6378747
Alignment:
Q  60 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 119  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||    
T  6378689 attattgcttttgttggaccaataaaagtttgccaagt-aagaatggtgggaagggtgta 6378747  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 48817647 - 48817588
Alignment:
Q  60 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 119  Q
    |||||||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||    
T  48817647 attattgcttttattggaccaataaaaatttgccaaatcagaagtggtgggaagggtgta 48817588  T

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