View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20933_low_7 (Length: 235)
Name: NF20933_low_7
Description: NF20933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20933_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45701897 - 45701677
Alignment:
| Q |
1 |
acaaagctttcctcgtttgannnnnnnatgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccataaaagccgc |
100 |
Q |
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| T |
45701897 |
acaaagctttcctcgtttgattttttgatgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccataaaagccgc |
45701798 |
T |
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| Q |
101 |
aaccattgagacagagtgttggaaccatgttgtttcacttaatttttgactaaagaaaaaagtgaaatagatctttgaaggtaatcgcaaacttacacta |
200 |
Q |
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| T |
45701797 |
aaccattgagacagagtgttggaaccatgttgtttcacttaatttttgactaaagaaaaaagtgaaatagatctttgaaggtaatcgcaaacttacacta |
45701698 |
T |
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| Q |
201 |
tgtttggtttaatgattgaat |
221 |
Q |
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| T |
45701697 |
tgtttggtttgatgattgaat |
45701677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 47440318 - 47440187
Alignment:
| Q |
28 |
atgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccataaaagccgcaaccattgagacagagtgttggaacca |
127 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||| | || ||||||||| ||| |||| |||||||| |
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| T |
47440318 |
atgttttctttgagataaacattgtaacactttgaacaaaggttcttgtttgaaggaagaccatagtaaccacaaccattggcacaaagtgatggaacca |
47440219 |
T |
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| Q |
128 |
tgttgtttcacttaatttttgactaaagaaaaa |
160 |
Q |
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| T |
47440218 |
tgttgtttcactt-agttttgactgaagaaaaa |
47440187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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