View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20934_high_1 (Length: 991)

Name: NF20934_high_1
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20934_high_1
NF20934_high_1
[»] chr5 (1 HSPs)
chr5 (9-973)||(11868613-11869598)
[»] chr1 (1 HSPs)
chr1 (497-591)||(3103561-3103655)


Alignment Details
Target: chr5 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 9 - 973
Target Start/End: Complemental strand, 11869598 - 11868613
Alignment:
Q  9 acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaacaaacgtagaagaacaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11869598 acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaataaacgtagaagaacaca 11869499  T
Q  109 aatcttaatcagtatggttttaaattattgatctggaatatagttattgcttgccgcaactaacgatgaacagtcggtgtaatgtacctgactggccctg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  11869498 aatcttaatcagtatggttttaaattattgatctggaatatagtaattgcttgccgcaactaaggatgaacagttggtgtaatgtacctgactggccctg 11869399  T
Q  209 tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11869398 tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa 11869299  T
Q  309 cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacagctcacactccaaa-tcaaattttcacaacaccacaaaattagaaaccctaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11869298 cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacaactcacactccaaaatcaaattttcacaacaccacaaaattagaaaccctaaa 11869199  T
Q  408 aaactaataaaaacct----------------aataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgagagcttttg 491  Q
    ||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  11869198 aaactaataaaaacctgctgagtggtgcctttaataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgatagtttttg 11869099  T
Q  492 tgaacttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctctgaggactaaaaacgccatcttctt 591  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  11869098 cgaacttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctttgaggactaaaaacgccaacttctt 11868999  T
Q  592 actcactggtcgtat-gtttgtaccctcccttgaattctaactgaattattcaccggtgaatcgtcaagtgctttgacctgggtccgggggacaggatgg 690  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  11868998 actcactggtcgtatagtttgtaccctccctcaaattctaactgaattattcaccagtgaatcgtcaagtgcttcgacctgggtccgggggacaggatgg 11868899  T
Q  691 accggtgtcttcgattgcagctcctttaacgggatgtcgccataattggtggctaaggggtctgctgagagattagagacggacatagtagccgcggagg 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  11868898 accggtgtcttcgattgcagctcctttaacgggatgtcgccataattggtggctaaggggtctgctgagagattagaggcggacgtaggagccgcggagg 11868799  T
Q  791 ccat---ttggcgacatcggagcttttccagcttggcggcttttttacttatagattctgatgatttcgtcgatgatggtgccggtgcaggctctttgga 887  Q
    ||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  11868798 ccatttgttggcaacatcggagcttttccagcttggcggcttttttacttatagattctgatgatttcgtcaatgatggtgccgatgcaggctctttgga 11868699  T
Q  888 ctcggaagatgacattgaaaaagattgtggaagcttcgatcgtactgaactcacggcgtattctcttcgattgtggaagcaaagat 973  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11868698 ctcgggagatgacattgaaaaagattgtggaagcttcgatcgtactgaactcagggcgtattctcttcgattgtggaagcaaagat 11868613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 497 - 591
Target Start/End: Complemental strand, 3103655 - 3103561
Alignment:
Q  497 ttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctctgaggactaaaaacgccatcttctt 591  Q
    ||||||||||||  ||| ||| ||||||| || |  || |||||||||||||| ||   | |||||||||||| |||||| ||||||||||||||    
T  3103655 ttcaccatctgcggacttactaaatcaggttgtgcctgaaccaagcactgtacggtgaaaccattttctctgatgactaagaacgccatcttctt 3103561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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