View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_high_11 (Length: 285)
Name: NF20934_high_11
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_high_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 28783303 - 28783575
Alignment:
| Q |
13 |
aaaatatactacataagtagaatagtaaaaaagattaacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaat |
112 |
Q |
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||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28783303 |
aaaatatactacagaagtagaatagaaaagaagaagaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaat |
28783402 |
T |
|
| Q |
113 |
ccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagtt |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783403 |
ccacttgttctggtgaaaaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagtt |
28783502 |
T |
|
| Q |
213 |
aattctggttcaggacaagcaggatagtaatgactaagtgatagaatccccttagcacaacccatgtctttta |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783503 |
aattctggttcaggacaagcaggatagtaatgactaagtgatagaatccccttagcacaacccatgtctttta |
28783575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 28742355 - 28742547
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
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|||||||||| |||| |||||||| ||||| ||||||||| ||| ||||||| |||| |||||||||||| || |||||||||||| ||||||||||| |
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| T |
28742355 |
aacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaatccactttcccttgtgaagaacttgaaggccaccaat |
28742454 |
T |
|
| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
244 |
Q |
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| T |
28742455 |
atggtc---ttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaatgtggttcaggacaagcaggatagtaatg |
28742547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 251
Target Start/End: Original strand, 28735273 - 28735472
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||| || ||| || |||| ||| |||||||| | |||| ||||||||| || |||||||| |
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| T |
28735273 |
aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaat |
28735372 |
T |
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| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgacta |
248 |
Q |
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||| || ||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
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| T |
28735373 |
atggtc---ttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgacca |
28735469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 28700269 - 28700466
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
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|||||||||| ||||||||||| | ||||||||||||||| | ||| || |||| ||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
28700269 |
aacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccggtggtacatcgatccacttgtcttggtgaagaacttgaaggccaccaat |
28700368 |
T |
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| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgac |
246 |
Q |
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| | ||||| ||||||| ||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
28700369 |
aatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgac |
28700466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 2050885 - 2050772
Alignment:
| Q |
128 |
aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga |
227 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||| |||||| ||| | |||||||||| ||||| ||||| | ||| ||||||||||||||| |
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| T |
2050885 |
aagaacttggaggccaccaatatggtc---ttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcagga |
2050789 |
T |
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| Q |
228 |
caagcaggatagtaatg |
244 |
Q |
| |
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|||| |||||| ||||| |
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| T |
2050788 |
caaggaggataataatg |
2050772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 2055294 - 2055181
Alignment:
| Q |
128 |
aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga |
227 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |||||| ||| | |||||||||| ||||| ||||| | ||| ||||||||||||||| |
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| T |
2055294 |
aagaacttggaggccaccaatatggtc---ttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcagga |
2055198 |
T |
|
| Q |
228 |
caagcaggatagtaatg |
244 |
Q |
| |
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|||| ||| |||||||| |
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| T |
2055197 |
caaggagggtagtaatg |
2055181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 2029673 - 2029481
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
|
|||||||||| | |||||||||||||||||| || ||||| || ||| || | |||||||||||| || | | | ||||||||||||||||||||| |
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|
| T |
2029673 |
aacttgcctgcaaaagatcaccaacattaactacgagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat |
2029574 |
T |
|
| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
244 |
Q |
| |
|
||| || ||| ||||||| |||||| ||| | | ||| |||| ||||| ||||||| ||| ||||||||||||||||||| |||||| ||||| |
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|
| T |
2029573 |
atggtc---ttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatg |
2029481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 10768641 - 10768503
Alignment:
| Q |
105 |
atatcaatccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttc |
204 |
Q |
| |
|
||||||||||| || | ||| | |||||||||||||||||||||||| || ||| ||||||| ||||| ||| | |||||||||| || || |||| |
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| T |
10768641 |
atatcaatccatttatcctgataaagaacttggaggccaccaatatggtc---ttggagaagcacagtgaggaaatcattatcagaatgcttggttgttc |
10768545 |
T |
|
| Q |
205 |
ccatagttaattctggttcaggacaagcaggatagtaatgac |
246 |
Q |
| |
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||| ||| ||||||||||||||||||| |||||| ||||||| |
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| T |
10768544 |
ccacagtcaattctggttcaggacaaggaggataataatgac |
10768503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 2058197 - 2058003
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||| || ||| || | |||||||||||| || | | | |||||||||||| |||||||| |
|
|
| T |
2058197 |
aacttgcctgaagaagatcaccaacattaactaggagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat |
2058098 |
T |
|
| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgac |
246 |
Q |
| |
|
||| || ||| ||||||| ||| || ||| | |||||||||| || || ||||||| ||| ||||||||||| ||| ||| |||||| ||||||| |
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|
| T |
2058097 |
atggtc---ttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgac |
2058003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 1948561 - 1948674
Alignment:
| Q |
128 |
aagaacttggaggccaccaatatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcagga |
227 |
Q |
| |
|
|||||||||||| ||||||||||| || ||| ||||||| ||||||||||| | || ||||| || || ||||||||||| | ||||||||||||| |
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| T |
1948561 |
aagaacttggagaccaccaatatggtc---ttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcagga |
1948657 |
T |
|
| Q |
228 |
caagcaggatagtaatg |
244 |
Q |
| |
|
|||| |||||| ||||| |
|
|
| T |
1948658 |
caagaaggataataatg |
1948674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 2034232 - 2034040
Alignment:
| Q |
49 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
148 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| ||||| || ||| || | |||||||||||| |||| | | |||||||| || ||||||| |
|
|
| T |
2034232 |
aacttgcctgcagaagatcaccgacatcaacaatgagagctccaggtacaggtgttatatcaatccatttgtcgtcatacagaacttgaagaccaccaac |
2034133 |
T |
|
| Q |
149 |
atgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
244 |
Q |
| |
|
||| || ||| ||||||| |||||| ||| | |||||||||| ||||| ||||| | ||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
2034132 |
atggtc---ttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatg |
2034040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 16439346 - 16439170
Alignment:
| Q |
65 |
atcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaatatgatcatcttgaaga |
164 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||| ||||||| |||||||||| | | | |||||||||||||| ||||| |||| |||||| ||| |
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|
| T |
16439346 |
atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacctgtatg---atcttgtaga |
16439250 |
T |
|
| Q |
165 |
agcaatgtga-gaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
244 |
Q |
| |
|
|||| |||| |||| |||| ||| | ||||||| ||||||||| |||||| || |||||||| || || |||||||||| |
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|
| T |
16439249 |
agcaccgtgatgaaatcaac-atctgcatgttttatggttcccaaagttaactcgggttcagggcaggccagatagtaatg |
16439170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 33761949 - 33761994
Alignment:
| Q |
201 |
gttcccatagttaattctggttcaggacaagcaggatagtaatgac |
246 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
33761949 |
gttcccatagttaattcgggttcagggcatgcaggatagtagtgac |
33761994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 19891020 - 19890978
Alignment:
| Q |
204 |
cccatagttaattctggttcaggacaagcaggatagtaatgac |
246 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
19891020 |
cccatagttaattcaggttcaggacatgctggatagtaatgac |
19890978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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