View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_high_16 (Length: 226)
Name: NF20934_high_16
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36315314 - 36315533
Alignment:
| Q |
1 |
cgacttcgcctggaataccgctgcccataacttacttgaatatggagttgtacgttgcctacaattataggacgaaggagctggccgattatatgacact |
100 |
Q |
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| T |
36315314 |
cgacttcgcctggaatactgctgcccataacttacttgaatatggagttgtacgttgcctacaattataggacgaaggagctggccgattatatgacact |
36315413 |
T |
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| Q |
101 |
gcttcaagtaacatattcatgtgattatttaattaattgtacaaaatatcctattcaacgttatttaccgattagtatatatttatgcaggcataaatct |
200 |
Q |
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| T |
36315414 |
gcttcaagtaacatattcatgtgattatttaattaattgtacaaaatatcatattcaacgttatttaccgattagtatatatttatgcaggcataaatct |
36315513 |
T |
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| Q |
201 |
tctagcactttccgagtatt |
220 |
Q |
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| T |
36315514 |
tctagcactttccgagtatt |
36315533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 10515889 - 10515950
Alignment:
| Q |
101 |
gcttcaagtaacatattcatgtgattatttaattaattgtacaaaatatcctattcaacgtt |
162 |
Q |
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| T |
10515889 |
gcttcaagtaacatattcatgcgattattttattaattgttcaaaatatcatattcgacgtt |
10515950 |
T |
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