View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_high_17 (Length: 210)
Name: NF20934_high_17
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 3040393 - 3040595
Alignment:
| Q |
4 |
aatgataaattctatatgtcaggagaagatgggccgggcagaatatgaagagattaaagtctccacaactgatttttatcttagagcaactcttaatttt |
103 |
Q |
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| T |
3040393 |
aatggtaaattctatatgtcaggagaagatgggccgggcagaagatgaagagagtaaagtctccacaactgatttttatcttagagcaacaattaatttt |
3040492 |
T |
|
| Q |
104 |
gatggagtgttttcacttttcaagcatcagaagaattcaactgatagtggaaattggactacagtgtggtctcatcctcgaaatatatgtcgttatgttg |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
3040493 |
gatggagtgttttcacttttcaagcatccgaagaattcaactgatattggaaattggactacagtgtggtctcatcctcgaaatatatgtcattattttg |
3040592 |
T |
|
| Q |
204 |
tta |
206 |
Q |
| |
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||| |
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| T |
3040593 |
tta |
3040595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 3071554 - 3071358
Alignment:
| Q |
10 |
aaattctatatgtcaggagaagatgggccgggcagaatatgaagagattaaagtctccacaactgatttttatcttagagcaactcttaattttgatgga |
109 |
Q |
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||||||||||| |||||||||||||| | | || |||| |||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
3071554 |
aaattctatatctcaggagaagatgga----gtacaagatgaggagagtaaagtctcccctactaatttttatcttagagcaactcttaattttgatgga |
3071459 |
T |
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| Q |
110 |
gtgttttcacttttcaagcatcagaagaattcaactgatagtggaaattggactacagtgtggtctcatcctcgaaatatatgtcgttatgttgttagtt |
209 |
Q |
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| T |
3071458 |
gtgttttcacctttcaagcatccaaagaactcaactgatagtggaaattggactacagtgtggtctcatcctaaaaatatatgtcaatatattgttagtt |
3071359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 3067872 - 3067730
Alignment:
| Q |
57 |
ttaaagtctccacaactgatttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgatagtggaaa |
156 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| |||||||||||||||| |
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| T |
3067872 |
ttaaagtctccactactaatttttatcttagagcaactcttaattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggagg |
3067773 |
T |
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| Q |
157 |
ttggactacagtgtggtctcatcctcgaaatatatgtcgttat |
199 |
Q |
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|||||||| |||||||||||| ||| ||||||||||| |||| |
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| T |
3067772 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattat |
3067730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 3034587 - 3034744
Alignment:
| Q |
51 |
aagagattaaagtctccacaactgatttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgatag |
150 |
Q |
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|||||| ||||||||| || ||| || |||||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||||| |||| | |
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| T |
3034587 |
aagagagtaaagtctctaccactctttattatcttagagcaactcttaattttgatggtgtgttcgcagtttacaagcatccgaagaattcaattgatgg |
3034686 |
T |
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| Q |
151 |
tggaaattggactacagtgtggtctcatcctcgaaatatatgtcgttatgttgttagt |
208 |
Q |
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|| | |||||| |||||||||||| | ||| ||||||||| |||| |||||||| |
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| T |
3034687 |
tgaaggttggaccacagtgtggtctaagcctgataatatatgtacttatattgttagt |
3034744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 3055449 - 3055550
Alignment:
| Q |
51 |
aagagattaaagtctccacaactgatttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgatag |
150 |
Q |
| |
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|||||| ||||||||| || ||||| |||||| |||| |||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||| || |
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| T |
3055449 |
aagagagtaaagtctctaccactgaattttatgttagggcaactcttaattttgatggagtgttcacactttacaagtatcccaagaattcaactgagag |
3055548 |
T |
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| Q |
151 |
tg |
152 |
Q |
| |
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|| |
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|
| T |
3055549 |
tg |
3055550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 3063816 - 3063718
Alignment:
| Q |
77 |
ttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgatagtggaaattggactacagtgtggtct |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||| | |||| | |||||| ||||| |||||| |
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| T |
3063816 |
ttttatcttagagcaactcttaattttgatggagtgttcacactttacaagcatcctaagagttcaactaagagtgaaggttggaccacagtatggtct |
3063718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 3042628 - 3042753
Alignment:
| Q |
50 |
gaagagattaaagtctccacaactgatttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgata |
149 |
Q |
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||||||| ||||||||| || || || |||||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||||| |||| |
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| T |
3042628 |
gaagagagtaaagtctctaccacgctttattatcttagagcaactcttaattttgatggtgtgttcgcagtttacaagcatccgaagaattcaattgatg |
3042727 |
T |
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| Q |
150 |
gtggaaattggactacagtgtggtct |
175 |
Q |
| |
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||| | |||||| || ||||||||| |
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| T |
3042728 |
gtgaaggttggaccactgtgtggtct |
3042753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 3065934 - 3065857
Alignment:
| Q |
75 |
atttttatcttagagcaactcttaattttgatggagtgttttcacttttcaagcatcagaagaattcaactgatagtg |
152 |
Q |
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||||||| ||||||||||||||||||||||| || |||||| |||||| |||||||| |||| ||| ||||| |||| |
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| T |
3065934 |
atttttaacttagagcaactcttaattttgacggggtgtttacactttacaagcatccaaagagttcgactgagagtg |
3065857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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