View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_high_2 (Length: 790)
Name: NF20934_high_2
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_high_2 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 475 - 774
Target Start/End: Complemental strand, 47321129 - 47320828
Alignment:
| Q |
475 |
ttggtatataacttgattaaaaatgagtttatggcttcaattatctgtgaatgagatttgaaggtaaattggttt--gtgtaggatttggtggcttgttt |
572 |
Q |
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| T |
47321129 |
ttggtatataacttgattaaaaatgagtttatggcttcaattatttgtgaatgagatttgaaggtaaagtggtttttgtgtaggacttggtggcttgttt |
47321030 |
T |
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| Q |
573 |
aggttgactaatttacgtaatagtgagctcaacaatgaatttgagtgtgaaaatcacgtaaaacctatcttcaagttagaatcattttttaatgcaaaat |
672 |
Q |
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| T |
47321029 |
aggttgactaatttacgtaatagtgagctcaacaatgaatttgagtgtgaaaatcacgtaaaacctatcttcaagttagaatcattttttaatgcaaaat |
47320930 |
T |
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| Q |
673 |
caattctacaatagaacatccaaacatagcgaactcaattctacatctccttaataaattttgcctcatccaaaagtggaacaaatcatacacttaatat |
772 |
Q |
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| T |
47320929 |
cagttctacaatagaacatccaaacatagctaactcaattctacatctccttaataaatttttcctcatccaaaagtggaacaaatcatacacttaatat |
47320830 |
T |
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| Q |
773 |
gt |
774 |
Q |
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| T |
47320829 |
gt |
47320828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 314 - 480
Target Start/End: Complemental strand, 47321315 - 47321149
Alignment:
| Q |
314 |
ttataataatgtgaggaatttgtttatgatttatgtgaatttgctttctatgtgtaatacagttggtcatgctttgattacaaatagagaaatcaaagtt |
413 |
Q |
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| T |
47321315 |
ttataataatgtgaggaatttgtttatgatttatgtgaatttgctttctatgtgtaatacagttggtcatgctttgattacaaatagagaaatcaaagtt |
47321216 |
T |
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| Q |
414 |
attttaaatttagcagtagttagttaatgttgtgagattgtcttttaaccttgatttttacttggta |
480 |
Q |
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| T |
47321215 |
attttaaatttagcagtagttagttaatgttgtgagattgtcttttaaccttgatttttacttggta |
47321149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 47321430 - 47321319
Alignment:
| Q |
10 |
gagtgagaagaatgatggaatttt-agaaatattgaagcttttcaaagctgtaagagttggaacaggtgaagctgacacagaaagatcgaagaagctgga |
108 |
Q |
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| T |
47321430 |
gagtgaaaagaatgatggattttttagaaatattgaagcttttcaaagctgtaagagttggaacaggtgaagctgacacagaaagatcgaagaagctgga |
47321331 |
T |
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| Q |
109 |
acaattggagaa |
120 |
Q |
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| T |
47321330 |
acaattggagaa |
47321319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 47317908 - 47317870
Alignment:
| Q |
388 |
tgattacaaatagagaaatcaaagttattttaaatttag |
426 |
Q |
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| T |
47317908 |
tgattacaaatagataaatcaaagttactttaaatttag |
47317870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 699
Target Start/End: Original strand, 12376 - 12434
Alignment:
| Q |
641 |
cttcaagttagaatcattttttaatgcaaaatcaattctacaatagaacatccaaacat |
699 |
Q |
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| T |
12376 |
cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacat |
12434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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