View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20934_high_5 (Length: 459)
Name: NF20934_high_5
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 47819960 - 47820387
Alignment:
| Q |
19 |
gtcttgcccacggatgcttcacatttgtgaaccttgtgcgggagaggggaggaatcgtcaattcatctttttcttcattgcgaagttgccggaagggtgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47819960 |
gtcttgcccacggatgcttcacatttgtgtaccttgtgcgggagaggggaggaatcgtcaattcatccttttcttcattgcgaagttgccggaagggtgt |
47820059 |
T |
|
| Q |
119 |
ggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47820060 |
ggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttatcttatgggagtgttggtgcggtggggagaggaagaagagtat |
47820159 |
T |
|
| Q |
219 |
tcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47820160 |
tcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaat---ttggtggtggat |
47820256 |
T |
|
| Q |
319 |
attgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgagggact |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
47820257 |
attgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttggaatccaagggact |
47820356 |
T |
|
| Q |
419 |
gtctctcgcggttgtgctaatttgatgatgt |
449 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
47820357 |
gtctctcgcggttgtgctaatttgaggatgt |
47820387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 60 - 438
Target Start/End: Original strand, 37035347 - 37035725
Alignment:
| Q |
60 |
gagaggggaggaatcgtcaattcatctttttcttcattgcgaagttgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatc |
159 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
37035347 |
gagagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggcgtgatattatggggtggtgggagaggtttattgtaatt |
37035446 |
T |
|
| Q |
160 |
ccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttggg |
259 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | || |||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
37035447 |
ccgcctaatttatttgtcttatgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggttaagattaatttggcatgttacgatttggg |
37035546 |
T |
|
| Q |
260 |
ttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgtt |
359 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
37035547 |
ttttatggaaagctagaaatgacaagatttttaataatcggaatccggaggtggtggatattgtggaggatattaaggtattgacttggcggtggtcgtt |
37035646 |
T |
|
| Q |
360 |
ggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgagggactgtctctcgcggttgtgctaa |
438 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||||||| | |||||||||| || || ||||| ||||||||| |
|
|
| T |
37035647 |
ggagataattgcaatgcctccttgtatgttctatgagtggtgttgggatccgagggaatgcctttcgcgattgtgctaa |
37035725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 416
Target Start/End: Complemental strand, 12825688 - 12825341
Alignment:
| Q |
70 |
gaatcgtcaattcatctttttcttcattgcgaagttgccggaagggtgtggc---gtgacatgatggggtggtgggaga-gttttattgtaatcccgcca |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| |||||| |||| ||| ||| |||||| ||||| | |||| ||| |||| ||||| |
|
|
| T |
12825688 |
gaatcgtcaattcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatg--ggggtgatgggataagtttcatt-taattccgcct |
12825592 |
T |
|
| Q |
166 |
aatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttat |
265 |
Q |
| |
|
|||||||| || | |||||||||||||| ||||| |||||||| ||| | || ||| || |||||| | ||| ||||| | |||| || |||||| | |
|
|
| T |
12825591 |
aatttattcgttctttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacgagtttggttttgt |
12825492 |
T |
|
| Q |
266 |
ggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagat |
365 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||||| | | ||||| || || ||||| ||| | |||||| | |||||| ||||||||||||| | |
|
|
| T |
12825491 |
ggaaagcaaggaatgataagatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtggtcgttggatag |
12825392 |
T |
|
| Q |
366 |
aatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgaggga |
416 |
Q |
| |
|
||| | ||| |||| ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
12825391 |
aatttctatgcctccttgtatgtattatgaatggtgttggaatccgaggga |
12825341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 279
Target Start/End: Complemental strand, 42749073 - 42748870
Alignment:
| Q |
76 |
tcaattcatctttttcttcattgcgaagttgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttg |
175 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| || ||||||| | | ||||||||||||||||| | || |||| || || || || || |
|
|
| T |
42749073 |
tcaattcatctttttcttcattgtgaggttgccggtagagtgtggcagggtgttatggggtggtgggagaggatgatgttaattccccctaacttcttca |
42748974 |
T |
|
| Q |
176 |
tcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctag |
275 |
Q |
| |
|
| | |||||||||||| |||| ||||||||||| ||||| | |||| | || ||||| | ||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
42748973 |
ttctttgggagtgttggagcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtgttatggaaagctag |
42748874 |
T |
|
| Q |
276 |
gaat |
279 |
Q |
| |
|
|||| |
|
|
| T |
42748873 |
gaat |
42748870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 279
Target Start/End: Complemental strand, 34774782 - 34774684
Alignment:
| Q |
181 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | |||| || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
34774782 |
tgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
34774684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University