View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_low_11 (Length: 319)
Name: NF20934_low_11
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 43054621 - 43054908
Alignment:
| Q |
13 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttaggacttagaactcaacatcacacttggtgggtataagtcgaa |
112 |
Q |
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| T |
43054621 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttagaacttagaactcaacatcacacttggtgggtataagtcgaa |
43054720 |
T |
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| Q |
113 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
212 |
Q |
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| T |
43054721 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
43054820 |
T |
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| Q |
213 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagc |
300 |
Q |
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| T |
43054821 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagc |
43054908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 143 - 299
Target Start/End: Original strand, 43062002 - 43062158
Alignment:
| Q |
143 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
242 |
Q |
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| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
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| Q |
243 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgag |
299 |
Q |
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| T |
43062102 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
43062158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 43024146 - 43024223
Alignment:
| Q |
223 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagc |
300 |
Q |
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| T |
43024146 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagc |
43024223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 43049276 - 43049374
Alignment:
| Q |
202 |
ccaagtttaaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagc |
300 |
Q |
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| T |
43049276 |
ccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagc |
43049374 |
T |
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