View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20934_low_15 (Length: 242)
Name: NF20934_low_15
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28783553 - 28783674
Alignment:
| Q |
1 |
cttagcacaacccatgtcttttaaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtatcattccaagtttcgttacatagtcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
28783553 |
cttagcacaacccatgtcttttaaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtgtcattccaagtttcgttacatattcacca |
28783652 |
T |
|
| Q |
101 |
tattccaaaagttcatccctac |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28783653 |
tattccaaaagttcatccctac |
28783674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 28742581 - 28742672
Alignment:
| Q |
16 |
gtcttttaaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtatcattccaagtttcgttacatagtcaccatattcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||| |
|
|
| T |
28742581 |
gtcttttaaatggtttggatgcaatccaagtgcttctgatagtaattcaaagagtacaattccaagtttcattacatgttctccatattcca |
28742672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 28735503 - 28735568
Alignment:
| Q |
20 |
tttaaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtatcattccaagtttc |
85 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28735503 |
tttaaatggtttgaatgcaatccaagagcttctgatagtaattcaaagagtattgttccaagtttc |
28735568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 28700505 - 28700567
Alignment:
| Q |
23 |
aaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtatcattccaagtttc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28700505 |
aaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtactcttccaagtttc |
28700567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University