View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20934_low_9 (Length: 346)
Name: NF20934_low_9
Description: NF20934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20934_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 37 - 337
Target Start/End: Original strand, 9631124 - 9631424
Alignment:
| Q |
37 |
gagcatatcgactctttacatctagatacaccaattttaccgtccaaatcatcatattcatctaaaaagagtgcgcatctaaacacgactcttatcgtac |
136 |
Q |
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| T |
9631124 |
gagcatatcgactctttacatctagatacaccaattttaccgtccaaatcatcatattcatctaaaaagagtgcgcatctaaacacgactcttatcgtac |
9631223 |
T |
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| Q |
137 |
aaacactagaacatcgaatctaaaccaaatttactattttttattttacacaaaatttactatctactatatcgttagcggttacttttcaccattacat |
236 |
Q |
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| T |
9631224 |
aaacactagaacatcgaatctaaaccaaatttactattttttattttacacaaaatttactatctactatatcgttagcggttacttttcaccattacat |
9631323 |
T |
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| Q |
237 |
ttatatatgaaaaataaataaaataaagaaccacgcatattctcataagtatactttcaaaggacataaaaaatcgtgttttcttgttaatgtgttcatc |
336 |
Q |
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| T |
9631324 |
ttatatatgaaaaataaataaaataaagaaccacgcatattctcataagcatactttcaaaggacataaaaaatcgtgttttcttgttaatgtgttcatc |
9631423 |
T |
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| Q |
337 |
t |
337 |
Q |
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| T |
9631424 |
t |
9631424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 284
Target Start/End: Original strand, 9627914 - 9628096
Alignment:
| Q |
98 |
ctaaaaagagtgcgcatctaaacacgactcttatcgtacaaacactagaacatcgaatctaaaccaaatttactattttttatt----ttacacaaaatt |
193 |
Q |
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| T |
9627914 |
ctaaaaagagtgtgcacttaaacacgactccaaccgtacaaacactagaacatcgagtctaaacaaagtttactatcttttatttttgttacacaaaatt |
9628013 |
T |
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| Q |
194 |
tactatctactatatcgttagcggttacttttcaccattacatttatatatgaaaaataaataaaataaagaaccacgcatattctcataa |
284 |
Q |
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| T |
9628014 |
tactatctaccatatcgttag--------tttcaccattacatttatatatgcaaaataaataaaatgaagaactatatatattctcataa |
9628096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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