View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_high_10 (Length: 291)
Name: NF20935_high_10
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 13813921 - 13813644
Alignment:
| Q |
1 |
caaaggccatctcttaataataatgtacaataaaataaaacccttgatactttttaggtaaagtaccatattagcttagtgtataaataatggagtactc |
100 |
Q |
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| T |
13813921 |
caaaggccatctcttaataataatgtacaataaaataaaacccttgatactttttaggtaaagtaccatattagctaagtgtataaataatggagtactc |
13813822 |
T |
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| Q |
101 |
tcttaatctctcaatcaagaaacagctcaaatacattgtttcctat--agatatatactttgtcacacacattttcttttatggcacctcaaccagatct |
198 |
Q |
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| T |
13813821 |
tcttaatctctcaatcaagaaacacctcaattgcattgtttcctatagagatatatactttatcacacacattatcttctatggcacctcaaccagatct |
13813722 |
T |
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| Q |
199 |
tgttaagatagggctagaagggttttctctcatagataacttttatggtccaccaacaaaaatgtccaataatggtgg |
276 |
Q |
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| T |
13813721 |
tgttaagatagggctagaagggtttgctctcatagataacttttatggtccaccaacaaaaatgtccaataatggtgg |
13813644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 13826467 - 13826187
Alignment:
| Q |
1 |
caaaggccatctcttaataataat---gtacaataaaataaaacccttgatactttttaggtaaagtaccatattagcttagtgtataaataatggagta |
97 |
Q |
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| T |
13826467 |
caaaggccatctcttaataataataatgtacaataaaataaaacccttgatactttttaggtaaagtaccatattagctaagtgtataaataatggagta |
13826368 |
T |
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| Q |
98 |
ctctcttaatctctcaatcaagaaacagctcaaatacattgtttcctat--agatatatactttgtcacacacattttcttttatggcacctcaaccaga |
195 |
Q |
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| T |
13826367 |
ctctcttaatctctcaatcaagaaacacctcaattgcattgtttcctatagagatatatactttatcacacacattatcttctatggcacctcaaccaga |
13826268 |
T |
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| Q |
196 |
tcttgttaagatagggctagaagggttttctctcatagataacttttatggtccaccaacaaaaatgtccaataatggtgg |
276 |
Q |
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| T |
13826267 |
tcttgttaagatagggctagaagggtttgctctcatagataacttttatggtccaccaacaaaaatgtccaataatggtgg |
13826187 |
T |
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