View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_high_2 (Length: 496)
Name: NF20935_high_2
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 28821888 - 28822308
Alignment:
| Q |
11 |
cacagatcatgtccactagtgtctgaaatctaagcctgcaattaatcaaataaagtattttttaggataaaaatttacattgtttatggtnnnnnnnnnn |
110 |
Q |
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| T |
28821888 |
cacagatcatgtccactagtgtctgaaatctaagcctacaattaatcaaataaagtattttttaggataaaaatttacattgtttatggtaaaaaaaa-- |
28821985 |
T |
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| Q |
111 |
nnnnnnnngcatgcccaaagcgaatcatttcttgtgattaggtaaattattcattaaatcttgccagcattcctaggtagaaacatcctttgtaaattat |
210 |
Q |
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| T |
28821986 |
--------gcatgcccaaagcgaatcatttcttgtgattaggtaaattattcattaaatcttgccagcattcctaggtagaaacatcctttgtaaattat |
28822077 |
T |
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| Q |
211 |
attctagtatctcttatgaannnnnnnataattattgaggtggtggt---aagtcgaagtctaactatgctaggtgatcaattaatttggccattaatga |
307 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28822078 |
--tcta---tctcttatgaatttttttataattattgaggtggtggtggtaagtcgaagtctaa--atgctaggtgatcaattaatttggccattaatga |
28822170 |
T |
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| Q |
308 |
tagtacttttaaatttaaatatacacgtactcgtatttttaaagtatgaaatgtttagtttctttgtgcaagtacaaattatagttgaattgtaacacaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28822171 |
tagtacttttaaatttaaatatacacgtactcgtatttttaaagtatgaaatgtttagtttctttgtgcaagtacaaattatagttgaatcgtaacacaa |
28822270 |
T |
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| Q |
408 |
aaaacaaataacattacgtgtggataattattttattt |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28822271 |
aaaacaaataacattacgtgtggataattattttattt |
28822308 |
T |
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