View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_high_3 (Length: 432)
Name: NF20935_high_3
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 120 - 414
Target Start/End: Complemental strand, 14667116 - 14666822
Alignment:
| Q |
120 |
tttgtagggacgaaaatcgtgtttgttcgtaaaagatatatgtaatgttacatatacattacctgagtcttgctggcttctttggccaaagatttgagtt |
219 |
Q |
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| T |
14667116 |
tttgtagggacgaaaatcgtgtttgttcgtaaaagatatatgtaatgttacatatacattacctgagtcttgctggcttctttggccaaagatttgagtt |
14667017 |
T |
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| Q |
220 |
ccgaatatagtgaggttcaattcctaaggcaaacatgttgcaccaatcaagtttttggtcctctgagaaaacaaaagcttgtccataaccttggactgtt |
319 |
Q |
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| T |
14667016 |
cctaatatagtgaggttcaattcctaaggcaaacatgttgcaccaatcaagtttttggtcctctgagaaaacaaaagcttgtccataaccttggactgtt |
14666917 |
T |
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| Q |
320 |
cctggagccatagggtacttctgtttctcatccaaaggtagcatgaaaaactccctactcatatcctctatgttctccatcagattaaggtcaat |
414 |
Q |
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| T |
14666916 |
cctggagccatagggtacttctgtttctcatccaaaggtagcatgaaaaactccctactcatatcctctatgttctccatcagattaaggtcaat |
14666822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14667167 - 14667113
Alignment:
| Q |
16 |
atattaggcaaaatacatgttgcggacctatagattgcttaattataccagtttg |
70 |
Q |
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| T |
14667167 |
atattaggcaaaatacatcttgcggacctatagattgcttaattataccagtttg |
14667113 |
T |
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