View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_high_4 (Length: 427)
Name: NF20935_high_4
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 15798376 - 15797974
Alignment:
| Q |
9 |
gagatgaactgaggcaaaacaaaaagtagttcgatataaccaagttgtcaactaaatttgaaacaagaaccaaggaaaagaaacaaacactgtttttcag |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15798376 |
gagaagaactgaggcaaaacaaaaagtagttcgatataaccaagtcgtcaactaaacttgaaacaagaagcaaggaaaagaaacaaacactgtttttcag |
15798277 |
T |
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| Q |
109 |
tgtggaggggtgagactctaatatgtgattaaaagtaccctatgaatcagatgttctaaatcaaaaccaaacgacagttgcaagtatcgtaagtcctaag |
208 |
Q |
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| T |
15798276 |
tgtggaggggtgagactctaaaatgtgattaaaagtaccctatgaatcagatgttctaaatcaaaaccaaacgacagttgcaagtatcgtaagtcctaag |
15798177 |
T |
|
| Q |
209 |
tattaaaaggttaacggccaaagagtaaaaacaaattataaagtctacgaaaacagacatgaaactaaattttcaaaaaacaggttatcaataagcttaa |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15798176 |
tattaaaaggttaacggccaaagaataaaaacaaattataaagtctacgaaaacagacatgaaactaaattttcaaaaaacaggttatcaataagcttaa |
15798077 |
T |
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| Q |
309 |
cgaaaatagagaagaaagtagcaaacaaagcaccttgttcaaccacgacatctgctaggaatacgataaacatgtgtctctttatgcagtaccccgaaac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15798076 |
cgaaaatagagaagaaagtagcaaacaaagcaccttgttcaaccacgacatctgctaggaatacgataaacatgtgtctctttatgcagtaccccgaaac |
15797977 |
T |
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| Q |
409 |
atg |
411 |
Q |
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||| |
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| T |
15797976 |
atg |
15797974 |
T |
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