View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_high_5 (Length: 372)
Name: NF20935_high_5
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 38225047 - 38224706
Alignment:
| Q |
13 |
aatataacaatggagcataaacttatataactaaatgtacctaataagtcatgtgtgacataacttcacattaaaaaatagatcaattatggcaaggaaa |
112 |
Q |
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| T |
38225047 |
aatataacaatggagcataaagttatataactaaatgcacctaataagtcatgtgtgacataacttcacattaaaaaatagatcaattatggcaaagaaa |
38224948 |
T |
|
| Q |
113 |
atgactgaataagatgataaattatactaatagcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggt |
212 |
Q |
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| T |
38224947 |
atgactgattaagatgataaattatactaatcgcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggt |
38224848 |
T |
|
| Q |
213 |
gggtcctccctcaaatttatacacacgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtgtaacaatttaccatattc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
38224847 |
gggtcctccctcaaatttatacacacgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtggaacaatttaccatagtc |
38224748 |
T |
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| Q |
313 |
taaggtccaggtattgtttcctttagtcttgatattattaac |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224747 |
taaggtccaggtattgtttcctttagtcttgatattattaac |
38224706 |
T |
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