View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_low_13 (Length: 265)
Name: NF20935_low_13
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_low_13 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 315 - 68
Alignment:
| Q |
1 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaagaacacaatggctggaggatacatagcacatggctctgaaaaagaatatcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
315 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatcc |
216 |
T |
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| Q |
101 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcattttaggtacaatattctca |
200 |
Q |
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| T |
215 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctca |
116 |
T |
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| Q |
201 |
ttttcccatttaagtgtttgacaaaatatgtctcaagaattgttcatat |
249 |
Q |
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| T |
115 |
tttt-ccattgaagtgtttgacaaaatatgtctcaagaattgttcatat |
68 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41973007 - 41972760
Alignment:
| Q |
1 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaagaacacaatggctggaggatacatagcacatggctctgaaaaagaatatcc |
100 |
Q |
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| T |
41973007 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatcc |
41972908 |
T |
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| Q |
101 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcattttaggtacaatattctca |
200 |
Q |
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| T |
41972907 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctca |
41972808 |
T |
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| Q |
201 |
ttttcccatttaagtgtttgacaaaatatgtctcaagaattgttcatat |
249 |
Q |
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| T |
41972807 |
tttt-ccattgaagtgtttgacaaaatatgtctcaagaattgttcatat |
41972760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1241378 - 1241132
Alignment:
| Q |
1 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaagaacacaatggctggaggatacatagcacatggctctgaaaaagaatatcc |
100 |
Q |
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| T |
1241378 |
tcatgtattttaggttttctaaactcttaactttctttgtcatttgaaagaacacaatggctggaggttacatagcacatggctctgaaaaagaatatcc |
1241279 |
T |
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| Q |
101 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcattttaggtacaatattctca |
200 |
Q |
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| T |
1241278 |
gggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttgaaggcttaatcttcggctatgatcttggcctttcaggtacaatattctca |
1241179 |
T |
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| Q |
201 |
ttttcccatttaagtgtttgacaaaatatgtctcaagaattgttcatat |
249 |
Q |
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| T |
1241178 |
tttt-ccaattaagtgtttg-ccaaatatgtctcaagaattgttcatat |
1241132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 42519598 - 42519351
Alignment:
| Q |
14 |
gttttctaaactcttaactttctttgtcatttgaaagaa-cacaatggctggaggatacatagcacatggctctgaaaaagaatatccgggaaaactcac |
112 |
Q |
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| T |
42519598 |
gttttctaaactcttaactttttttgtgatttgaaagaaacacaatggctggaggttacatagcacaaggctctggaaaagaatatccaggaaaattcac |
42519499 |
T |
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| Q |
113 |
ctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcattttaggtacaatattc-------------tc |
199 |
Q |
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| T |
42519498 |
cattagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattctaatttattttcttc |
42519399 |
T |
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| Q |
200 |
attttcccatttaagtgtttgacaaaatatgtctcaagaattgttcat |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519398 |
ttttttccatttaagtgtttgacaaaatatgtctcaagaattgttcat |
42519351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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