View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_low_16 (Length: 236)
Name: NF20935_low_16
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41841718 - 41841938
Alignment:
| Q |
1 |
aaaattaacttgtaattactccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcataaactaaaaccaactttccctg |
100 |
Q |
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| T |
41841718 |
aaaattaacatgtaattactccaaagaacataggctaaaaagtgtgcatgtagacggcaatacatatacagttagcataaactaaaatcaactttccctg |
41841817 |
T |
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| Q |
101 |
aaatcctacaaaatgttatgcatatatatgtatgatacatatacagttacagcaatgcataatacttcatttcattctgaccgtgtgcttgttttagttt |
200 |
Q |
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| T |
41841818 |
aaatcctacaaaatgttatgtatatgtatgtatgatacatatacagttacagcaatgcataatacttcatttcattctgaccgtgtgcttgttttagttt |
41841917 |
T |
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| Q |
201 |
ttgattacattacatacataa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41841918 |
ttgattacattacatacataa |
41841938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 41841508 - 41841549
Alignment:
| Q |
56 |
ggcaatacatatacagttagcataaactaaaaccaactttcc |
97 |
Q |
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| T |
41841508 |
ggcaatacatatacagttagcataaactaaaatcaactttcc |
41841549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3461756 - 3461833
Alignment:
| Q |
1 |
aaaattaacttgtaattactccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcat |
78 |
Q |
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||||||| | |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| |
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| T |
3461756 |
aaaattatcatgtaattactccaaagaacataggctaaaaagtgtgtatgtagacagcaatacatatacagtttgcat |
3461833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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