View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_low_17 (Length: 236)
Name: NF20935_low_17
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 30261338 - 30261392
Alignment:
| Q |
167 |
taagtaaagttacagttggctaaaagaaattatatacatttggtgaacccctttg |
221 |
Q |
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| T |
30261338 |
taagtaaagttacagttggctaaaagaaattatatacatttggtgaacccatttg |
30261392 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 29446898 - 29446852
Alignment:
| Q |
175 |
gttacagttggctaaaagaaattatatacatttggtgaacccctttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29446898 |
gttacagttggctaaaagaaattatatacatttggtgaacccatttg |
29446852 |
T |
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