View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_low_6 (Length: 359)
Name: NF20935_low_6
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 45725803 - 45725478
Alignment:
| Q |
16 |
atagatgaaaatagcttaaaattgtatgaaaacaacttttataaaagtaacgcaaactataagctataaactgcaaaataagctgtttatccataatctt |
115 |
Q |
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| T |
45725803 |
atagatgaaaatagcttaaaattgt-tgaaaacaacttttataaaagtaacgcaaactataagctataaactgcaaaataagctgtttatccataatctt |
45725705 |
T |
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| Q |
116 |
accttaaagtcattgtttataatcatgcctatggcacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaataagtgatgg |
215 |
Q |
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| T |
45725704 |
accttaaagtcattgtttataatcatgcctatggtacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaataagtgatgg |
45725605 |
T |
|
| Q |
216 |
gttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcatattgttt |
315 |
Q |
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| T |
45725604 |
gttgtttaatcttcttataaaccaactcaaccgcaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcatattgttt |
45725505 |
T |
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| Q |
316 |
tgcagaaacaccagcaggacgatcact |
342 |
Q |
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| T |
45725504 |
tgcagaaacaccagcaggacgatcact |
45725478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 45729899 - 45729667
Alignment:
| Q |
110 |
aatcttaccttaaagtcattgtttataatcatgcctatggcacagaagatagtggcaaacatgcacataacgaactgaaattccataacaagagaataag |
209 |
Q |
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| T |
45729899 |
aatcttaccttaaagtcattgtttgcaatcatgcctatggcacagaagagagtggcaaacatgcacgtaacgaactgaaattccataacaaaagaataag |
45729800 |
T |
|
| Q |
210 |
tgatgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcata |
309 |
Q |
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| T |
45729799 |
tgacgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaata |
45729700 |
T |
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| Q |
310 |
ttgttttgcagaaacaccagcaggacgatcact |
342 |
Q |
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| T |
45729699 |
ttgttttgcagaaacaccagcaggacgatcact |
45729667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 45730018 - 45729936
Alignment:
| Q |
20 |
atgaaaatagcttaaaa-ttgtatgaaaacaac----ttttataaaagtaacgcaaactataagctataaactgcaaaataag |
97 |
Q |
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| T |
45730018 |
atgaaaatagcttaaaacttgtacgaaaacaacaactttttataaaagtaactcaaactataagctataaactgcaaagtaag |
45729936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 27353012 - 27352909
Alignment:
| Q |
172 |
gcacataacgaactgaaattccataacaagagaataagtgatgggttgtttaatcttcttataaaccaactcaaccgaaggcaaaacaaatccatacaat |
271 |
Q |
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||||||||| | ||||| |||||||||||||||||||| || ||||||| |||| |||||||||||||| | | | || ||||||||||||||||| |
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| T |
27353012 |
gcacataacaagctgaatctccataacaagagaataagtaataacttgtttactctttttataaaccaactccaacaacggtaaaacaaatccatacaaa |
27352913 |
T |
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| Q |
272 |
gcag |
275 |
Q |
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|||| |
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| T |
27352912 |
gcag |
27352909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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