View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20935_low_7 (Length: 353)
Name: NF20935_low_7
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20935_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 1346823 - 1347143
Alignment:
| Q |
11 |
cataggctaccagaatctagaaaacggcactgtacatagttagtagattaggagaaacccaaactccgaagtatcgtaagaaatttcaacgttcaatcca |
110 |
Q |
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| T |
1346823 |
cataggctaccagaatctagaaa-cggtactgtatatagtcagtagattagtagaaacccaaactccgaagtatcataagaaatttcaacgttcaatcca |
1346921 |
T |
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| Q |
111 |
cttatggacaatacataacacaaagtatataatagtcaagaaaggctgcactacatgtgttttagtctactagtacacttgaggattggatttggacaca |
210 |
Q |
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| T |
1346922 |
cttatggacaatacataacacaaagtatataatagtcaagaaaggctgcactacatgtgttttagtctactagtacacttgaggattggatttggacaca |
1347021 |
T |
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| Q |
211 |
cactataaatctatattt-tatgtattaataataataatgaaggagaaacataattgaaatttttattaggaagagttaagctatggcagtagtagagct |
309 |
Q |
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| T |
1347022 |
tactataaatctatatttatatgtat------taataatgaaggagaaacataattgaaatttttatcaggaagagctaagctatggcagtagtagaggt |
1347115 |
T |
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| Q |
310 |
ctcaattccaagcaatggaagaggatac |
337 |
Q |
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| T |
1347116 |
cccaattccaagcaatggaagaggatac |
1347143 |
T |
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