View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20935_low_8 (Length: 331)

Name: NF20935_low_8
Description: NF20935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20935_low_8
NF20935_low_8
[»] chr8 (3 HSPs)
chr8 (21-311)||(29150964-29151254)
chr8 (175-240)||(26387133-26387198)
chr8 (223-263)||(43884856-43884896)
[»] chr2 (4 HSPs)
chr2 (106-294)||(2595112-2595300)
chr2 (118-294)||(2580375-2580551)
chr2 (119-294)||(2575995-2576169)
chr2 (164-308)||(2585807-2585950)
[»] chr6 (1 HSPs)
chr6 (108-294)||(30398208-30398390)
[»] chr7 (4 HSPs)
chr7 (164-295)||(46768559-46768689)
chr7 (164-293)||(36259410-36259539)
chr7 (164-294)||(36254531-36254661)
chr7 (164-293)||(36262222-36262342)
[»] chr3 (2 HSPs)
chr3 (108-198)||(21621218-21621308)
chr3 (108-198)||(21642888-21642978)
[»] chr4 (8 HSPs)
chr4 (164-294)||(35766191-35766321)
chr4 (164-266)||(19353603-19353705)
chr4 (164-293)||(19358295-19358424)
chr4 (175-264)||(19360627-19360716)
chr4 (164-233)||(19355222-19355291)
chr4 (191-261)||(11240745-11240815)
chr4 (214-265)||(11240665-11240716)
chr4 (164-227)||(19356700-19356763)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 29150964 - 29151254
Alignment:
Q  21 gcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccggttcaacccaatgca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  29150964 gcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccagctcaacccaatgca 29151063  T
Q  121 gagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttgga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151064 gagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttgga 29151163  T
Q  221 gatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataacatagg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151164 gatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataacatagg 29151254  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 26387133 - 26387198
Alignment:
Q  175 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcct 240  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||||||    
T  26387133 gatgtgaaatctcttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 43884856 - 43884896
Alignment:
Q  223 tctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  43884856 tctattatttctgatcctaaatttgttaaacttcaccttaa 43884896  T

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Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 106 - 294
Target Start/End: Original strand, 2595112 - 2595300
Alignment:
Q  106 gttcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtg 205  Q
    ||||||||||| |||||||  ||||||||||||||| || | |||||||  |||||| |||||||||| ||||||||||| |||||||||||||| || |    
T  2595112 gttcaacccaacgcagagtttccggtaagcctctcttacgatcttatcgtcgaaatcctttccttttctgatgtgaaatcacttatgcaaatgagatgcg 2595211  T
Q  206 tatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 294  Q
    ||||||||||||||| |||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  2595212 tatgcaaatcttggaaatctattatttctgatcatgaattcatcaaacttcaccttaagcgatcggcgcgaaacccttacttgacacta 2595300  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 118 - 294
Target Start/End: Original strand, 2580375 - 2580551
Alignment:
Q  118 gcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatctt 217  Q
    |||||||||||||||||||||||| |  ||||||| |  |||||| |||| |||||  |||||||||||||||||| |||||| || |||||||||||||    
T  2580375 gcagagtcaccggtaagcctctcttatgaccttatagtcgaaatcctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatctt 2580474  T
Q  218 ggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 294  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||  || ||||||||||||||||||||||||    
T  2580475 ggagatctatcatttctgatcctaaatttatcaaacttcaccttaagcaatcggcgcgaaacccttacttgacacta 2580551  T

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Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 2575995 - 2576169
Alignment:
Q  119 cagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttg 218  Q
    ||||||| ||| ||||||||||| |  |||||||| | ||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  2575995 cagagtctccgataagcctctcttatgaccttatcaccgaagtc-tttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttg 2576093  T
Q  219 gagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 294  Q
    || |||||| |||||||||||||||||| | ||||||||||||||||| || || |||||||||||||||||||||    
T  2576094 gaaatctattatttctgatcctaaattcattaaacttcaccttaagcgatcggcacgaaacccttacttgacacta 2576169  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 2585807 - 2585950
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| || |||| |||| || ||||| ||||||||||||||||    
T  2585807 tttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaacttcaccttaa 2585906  T
Q  264 gcgttccgcgcgaaacccttacttgacactaatccgagataacat 308  Q
    ||| || || ||||| ||||||||||||||| |||||| ||||||    
T  2585907 gcgatcagcacgaaa-ccttacttgacactattccgaggtaacat 2585950  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 294
Target Start/End: Original strand, 30398208 - 30398390
Alignment:
Q  108 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgta 207  Q
    ||||||||| |||||||  |||||||||||     || |||||||||| |||||| ||||||||||| |||||||||||||||||| |||| | || |||    
T  30398208 tcaacccaacgcagagtttccggtaagcctt----acgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgctaatgcgatgagta 30398303  T
Q  208 tgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 294  Q
    ||| ||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||| || ||| ||||||| ||| ||||||||    
T  30398304 tgccaatcttggaaatctattatttctgaacctgaattcgtcaaacttcaccttaagcgatcggcgtgaaacccgtacatgacacta 30398390  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 46768559 - 46768689
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| ||||| ||||||| |||  |||||||||| ||||     
T  46768559 tttccttctccgatgtgaaatctcttatgcgaatgagatgtgt-tgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatcttac 46768657  T
Q  264 gcgttccgcgcgaaacccttacttgacactaa 295  Q
    | ||||||| ||||||||||||||||||||||    
T  46768658 gtgttccgcacgaaacccttacttgacactaa 46768689  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 36259410 - 36259539
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| || ||||| ||||||||    
T  36259410 tttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaa 36259509  T
Q  264 gcgttccgcgcgaaacccttacttgacact 293  Q
    ||| || ||  |||||||| ||||||||||    
T  36259510 gcgatctgcaagaaaccctcacttgacact 36259539  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 36254531 - 36254661
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||| ||||||||||||||||  |||||||||||||||||  | ||||| ||||||| |||| | ||||| |||||||| || || ||||| ||| ||||    
T  36254531 tttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaatttccgatcctaactttgtgaaactccacattaa 36254630  T
Q  264 gcgttccgcgcgaaacccttacttgacacta 294  Q
    ||| || ||  |||||||| |||||||||||    
T  36254631 gcgatcagcaagaaaccctcacttgacacta 36254661  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 36262222 - 36262342
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||| ||||| ||||| ||||  ||||||||||||||||||||||||||         |||||| ||||| |||||||  || || ||||| ||||||||    
T  36262222 tttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaa---------atctataatttccgatcctatctttgtgaaactccaccttaa 36262312  T
Q  264 gcgttccgcgcgaaacccttacttgacact 293  Q
    ||| |||||  |||||||| ||||||||||    
T  36262313 gcgatccgcaagaaaccctcacttgacact 36262342  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 21621308 - 21621218
Alignment:
Q  108 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 198  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21621308 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21621218  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 21642978 - 21642888
Alignment:
Q  108 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 198  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21642978 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21642888  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 35766191 - 35766321
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||||||||||||||||||||||||||| |||||||  ||  | ||||| |||||||  ||||| || || ||||||||||| | |||||||||||||||    
T  35766191 tttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctccgatcctaaatttgccaaacttcaccttaa 35766290  T
Q  264 gcgttccgcgcgaaacccttacttgacacta 294  Q
    ||| || || | ||||||| |||||| ||||    
T  35766291 gcgatcagcacaaaaccctcacttgatacta 35766321  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 19353603 - 19353705
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||||| ||||||| ||||||  ||||  ||||||| ||  | ||||| ||||||||    
T  19353603 tttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctatattttccaatcctaactttttgaaactccaccttaa 19353702  T
Q  264 gcg 266  Q
    |||    
T  19353703 gcg 19353705  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 19358295 - 19358424
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 263  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| |  ||||||| |||||| |||||  ||||||| || || |||||  |||||||    
T  19358295 tttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctcttggaaatctataatttccaatcctaactttgtgaaactctaccttaa 19358394  T
Q  264 gcgttccgcgcgaaacccttacttgacact 293  Q
    ||| |  ||  |||||||| ||||||||||    
T  19358395 gcgatttgcatgaaaccctcacttgacact 19358424  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 19360627 - 19360716
Alignment:
Q  175 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaag 264  Q
    ||||||||||  || ||| ||||||||||| ||| ||| ||||||| |||| | ||||||||||||||||| || |||||||||||||||    
T  19360627 gatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcctaaatttgtgaaacttcaccttaag 19360716  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 19355222 - 19355291
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttc 233  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||| ||||||| |||||| |||||    
T  19355222 tttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttc 19355291  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 11240745 - 11240815
Alignment:
Q  191 tgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcacctt 261  Q
    |||| ||||||||  ||||||| ||||||| |||||| |||||| ||||||||||  ||||||||||||||    
T  11240745 tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcctaaatttttcaaacttcacctt 11240815  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 11240716 - 11240665
Alignment:
Q  214 tcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagc 265  Q
    ||||||| ||||||  |||| |||||||||||||| ||||||||||||||||    
T  11240716 tcttggaaatctatagtttcagatcctaaattcgtgaaacttcaccttaagc 11240665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 19356700 - 19356763
Alignment:
Q  164 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctat 227  Q
    |||| ||||||| ||| ||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  19356700 tttcattttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctat 19356763  T

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