View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20936_high_11 (Length: 324)

Name: NF20936_high_11
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20936_high_11
NF20936_high_11
[»] chr2 (6 HSPs)
chr2 (37-233)||(7042409-7042625)
chr2 (37-233)||(7029034-7029250)
chr2 (231-318)||(7030021-7030108)
chr2 (231-318)||(7044353-7044441)
chr2 (235-318)||(7036145-7036229)
chr2 (68-115)||(7034375-7034422)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 7042409 - 7042625
Alignment:
Q  37 cagtcgaaaatttatttgagggatgaaaatatattaatggaaaaccataacttcaatgatattttgattcatttgggattatacacatgtaatttaattt 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  7042409 cagtagaaaatttatttgagggatgaaaatatattaatggaaaaccataacttcaatgatattttgattcatttgggattatacataagtaatttaattt 7042508  T
Q  137 aaatggttaatggtaatttaac--------------------cattttcgatagactttatttactttcgaattgaaatccgaattactaatacctcttt 216  Q
    ||||||||||||||||||||||                     ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  7042509 aaatggttaatggtaatttaactttaattcataaacgaaacaaattttcgatagactttatttacttttgaattgaaatccgaattaccaatacctcttt 7042608  T
Q  217 cacacgagttggagggt 233  Q
    |||||||||||||||||    
T  7042609 cacacgagttggagggt 7042625  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 7029034 - 7029250
Alignment:
Q  37 cagtcgaaaatttatttgagggatgaaaatatattaatggaaaaccataacttcaatgatattttgattcatttgggattatacacatgtaatttaattt 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  7029034 cagtagaaaatttatttgagggatgaaaatatattaatggaaaaccataacttcgatgatattttgattcattttggattatacacaagtaatttaattt 7029133  T
Q  137 aaatggttaatggtaatttaac--------------------cattttcgatagactttatttactttcgaattgaaatccgaattactaatacctcttt 216  Q
    ||||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  7029134 aaatggttaatggtaatttaactttaattcataaacgaaataaattttcgatagactttatttactttcgaattgaacaccgaattactaatacctcttt 7029233  T
Q  217 cacacgagttggagggt 233  Q
    ||||| |||||||||||    
T  7029234 cacacaagttggagggt 7029250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 7030021 - 7030108
Alignment:
Q  231 ggtcctctactttcttcctagccattgttcatggtggcacatttttgtaccatatagtgccatttccatccattagcatgaatatttt 318  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  7030021 ggtcctctactttcttcctatccattgttcatggtggcacatttttgtaccatatactaccatttccatccattagcattaatatttt 7030108  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 7044353 - 7044441
Alignment:
Q  231 ggtcctctactttcttcctagccattgttcatggtggcacatttttgtac-catatagtgccatttccatccattagcatgaatatttt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||    
T  7044353 ggtcctctactttcttcctagccattgttcatggtggcacatttttgtacacatatactaccatttccatcaattagcatgaatatttt 7044441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 7036145 - 7036229
Alignment:
Q  235 ctctactttcttcctagccattgttcatggtggcacatttttgtac-catatagtgccatttccatccattagcatgaatatttt 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||  |||||| |||||||||||||||||||    
T  7036145 ctctactttcttcctagccattgttcttggtggcacatttttgtacacatacactgctgtttccacccattagcatgaatatttt 7036229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 7034375 - 7034422
Alignment:
Q  68 tattaatggaaaaccataacttcaatgatattttgattcatttgggat 115  Q
    ||||||||||||||||||| | |||||||||||  |||||||||||||    
T  7034375 tattaatggaaaaccataaatccaatgatatttcaattcatttgggat 7034422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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