View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20936_high_17 (Length: 264)
Name: NF20936_high_17
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_high_17 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 9829157 - 9829405
Alignment:
| Q |
16 |
atcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgc |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9829157 |
atcagaatcttcctcgttgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgc |
9829256 |
T |
|
| Q |
116 |
atatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaat |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9829257 |
atatcagatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaat |
9829356 |
T |
|
| Q |
216 |
cagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9829357 |
cagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctc |
9829405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 9755705 - 9755949
Alignment:
| Q |
16 |
atcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgc |
115 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||| || ||| ||| |||||| |
|
|
| T |
9755705 |
atcagaatcttcctcactgctttgatcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgccttgc |
9755804 |
T |
|
| Q |
116 |
atatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaat |
215 |
Q |
| |
|
|||||| | ||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
9755805 |
atatcagacacatcttgaaaataagagttcttgttactagta----attctgcgtcactattagactcatcttgtgaagtattagacatgccttcacaat |
9755900 |
T |
|
| Q |
216 |
cagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctc |
264 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
9755901 |
cagatgcatcaaaatcatcaacaataaaatcattcatgtttccttcctc |
9755949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 9813882 - 9814112
Alignment:
| Q |
31 |
attgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatct |
130 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||| |||||||| |
|
|
| T |
9813882 |
attgatttgatcctaattggagtaaaaattctttcccttttctgctgcagaatttgttgacagagaaatacttccactaccttgcatatcagatacatct |
9813981 |
T |
|
| Q |
131 |
tgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaat |
230 |
Q |
| |
|
|| |||| ||||| |||| ||| || | ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9813982 |
tgcaaataagaatccttgctacacgaactagattctgcgtcactgctagactcatctcgtgaattattagacatgccttcacaatcagatgcatcaaaat |
9814081 |
T |
|
| Q |
231 |
catcaccaataaaatcaatattgtttccttcctc |
264 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||| |
|
|
| T |
9814082 |
aat---caataaaatcactattgttttcttcctc |
9814112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 9804109 - 9804250
Alignment:
| Q |
11 |
ataatatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactac |
110 |
Q |
| |
|
|||| ||||||| ||||| |||| ||||||||||||||||||| || ||||| | ||||||||||||||||| |||| ||||||| ||| | ||||| |
|
|
| T |
9804109 |
ataaaatcagaaatttcctcattgttttgatcataattggagtaaaagttctt-cgcttttctgctgcagaacttgttggcagagaaatacctccactac |
9804207 |
T |
|
| Q |
111 |
cttgcatatcaaatacatcttgaaaattagaattcttgttact |
153 |
Q |
| |
|
||||||| ||| ||||||| || |||| ||||| |||| |||| |
|
|
| T |
9804208 |
cttgcatttcagatacatcctgcaaataagaatccttgctact |
9804250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 9708475 - 9708552
Alignment:
| Q |
170 |
tcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatca |
247 |
Q |
| |
|
|||||||||||| | || |||| |||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
9708475 |
tcactattagactcttcctgtgacttatcagatatgtcttcacaatcagatgcatcaacatcatcaacaataaaatca |
9708552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University