View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_high_19 (Length: 250)
Name: NF20936_high_19
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_high_19 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 6448161 - 6448403
Alignment:
| Q |
8 |
cgaagaatatcatgaagagaaatcatacaatccatactcagataaacctttatacgctccaacaaattagaatacatgcaaatagtcatagtaacataca |
107 |
Q |
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| T |
6448161 |
cgaagaatatcatcaagagaaatcatacaatccatactcagataaacctttatacgctccaacaaattagaatacatgcaaatagtcatagtaacataca |
6448260 |
T |
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| Q |
108 |
aaagactttatttccgctttgtaacacaaattctaaatctcagcatgaaggatattagaccaaccaacactcccgtggagcccaaatacgaagcttccat |
207 |
Q |
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| T |
6448261 |
aaagactttatttccgctttgtaacacaaattctaaatctcagcatgaaggatattagaccaaccaacactcccgtggagcccaaatatgaagcttccat |
6448360 |
T |
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| Q |
208 |
cttgccttctaaagagacaaccaaagcctgcaaactctagatt |
250 |
Q |
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| T |
6448361 |
cttgccttctaaagagacaaccaaagcctgcaaactctagatt |
6448403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 29907532 - 29907624
Alignment:
| Q |
143 |
aatctcagcatgaaggatattagaccaaccaacactcccgtggagcccaaatacgaagcttccatcttgccttctaaagagacaaccaaagcc |
235 |
Q |
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| T |
29907532 |
aatctcagcatgaaggatattaaacagaccaacactcatatggaacctaaatatgaagctcccatcatgtcttctaatgagaccacaaaagcc |
29907624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 6310 - 6230
Alignment:
| Q |
150 |
gcatgaaggatattagaccaaccaacactcccgtggagcccaaatacgaagcttccatcttgccttctaaagagacaacca |
230 |
Q |
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| T |
6310 |
gcatgaaggatattagaccaacgaacacttccgtggaacccaaatatgaaacttccatcttgccttcgaacgagacaacca |
6230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 45486710 - 45486647
Alignment:
| Q |
145 |
tctcagcatgaaggatattagaccaaccaacactcccgtggagcccaaatacgaagcttccatc |
208 |
Q |
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| T |
45486710 |
tctcagcttgaaggatattagaccaaccaacactcccatggaaccaaaatatgaagctcccatc |
45486647 |
T |
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