View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_high_32 (Length: 201)
Name: NF20936_high_32
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 34934234 - 34934131
Alignment:
| Q |
81 |
catgactaactactatttaaattgtcgttgttataagaaatatatacctacattttgatgctctatgaattggctccattgaaagatacatttggtaaag |
180 |
Q |
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| T |
34934234 |
catgactaattactatttaaattgtcgttgttataagaaatatatacctacattttgatgctctatgaattggctccattgaaagatacatttggtaaag |
34934135 |
T |
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| Q |
181 |
aaaa |
184 |
Q |
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|||| |
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| T |
34934134 |
aaaa |
34934131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 34934445 - 34934414
Alignment:
| Q |
34 |
gagatagttacacacaacatgactaactacca |
65 |
Q |
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| T |
34934445 |
gagatagttacacacaacatgactaactacca |
34934414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 34930409 - 34930350
Alignment:
| Q |
124 |
atacctacattttgatgctctatgaattggctccattgaaagatacatttggtaaagaaaa |
184 |
Q |
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|||||||||||| ||||||||| ||||||||| | |||||||||| || ||||||| |||| |
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| T |
34930409 |
atacctacatttagatgctctaagaattggct-cgttgaaagatatatgtggtaaataaaa |
34930350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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