View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_high_6 (Length: 436)
Name: NF20936_high_6
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 70 - 412
Target Start/End: Complemental strand, 16918002 - 16917660
Alignment:
| Q |
70 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
169 |
Q |
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| T |
16918002 |
ggaatccaataaaatcctctacaactccaaacaaacgagataggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16917903 |
T |
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| Q |
170 |
tatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatcgctatactcttcttctgcacataacaattcaatgtgtta |
269 |
Q |
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| T |
16917902 |
tatacatgttcatcactcatggctcatca---acctccatgtccaattcactgtctgaatcgctatactcttcttctgcacataacaattcaatgtgtta |
16917806 |
T |
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| Q |
270 |
gaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaaattacagaaaaatctttaaattaccgttaattggatcca |
369 |
Q |
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| T |
16917805 |
gaaaacatcaggaattttatgagaatactggctttagtaaaaaacgtaacttatttactaaattacggaaaaatcttaaaattaccgttaattcgatgca |
16917706 |
T |
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| Q |
370 |
caaaatctggtttaa---taggaatatgagctatcttataccaatc |
412 |
Q |
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| T |
16917705 |
caaaatctgattcaaaattaggaacatgagctatcttataccaatc |
16917660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 70 - 378
Target Start/End: Complemental strand, 16912828 - 16912523
Alignment:
| Q |
70 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
169 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16912828 |
ggaatccaataaaatcctctacaactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16912729 |
T |
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| Q |
170 |
tatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatcgctatactcttcttctgcacataacaattcaatgtgtta |
269 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16912728 |
tatacatgttcatcactcatggctcatca---acctccatgtccaattcattgtctgaattgctatactcttcttctgcacataacaattcaatgtgtta |
16912632 |
T |
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| Q |
270 |
gaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaaattacagaaaaatctttaaattaccgttaattggatcca |
369 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| || |||||||||||||||||||||||||||| || |
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| T |
16912631 |
gaaaacatcaagaattttatgagaatactggctttagtaaaaaacgtaacttatttactaaattatagcaaaatctttaaattaccgttaattggatgca |
16912532 |
T |
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| Q |
370 |
caaaatctg |
378 |
Q |
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| T |
16912531 |
caacatctg |
16912523 |
T |
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