View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_high_8 (Length: 399)
Name: NF20936_high_8
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 13591674 - 13591298
Alignment:
| Q |
19 |
ccataagataagcgcaatgagtttgaacacaagcataagcaagttgatcatcactaagacactcttcactccaattactcattctaatctcttctctaag |
118 |
Q |
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| T |
13591674 |
ccataagataagcgcaatgagtttgaacacaagcataagcaagttgatcatcactaagacactcttcactccaattactcattctaatctcttctctaag |
13591575 |
T |
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| Q |
119 |
ctccactttcaatccaaggcttttataaataatctcttccactgaatcatgatcgtactcttctctgtagaacgagagatctaaaggatctctatgaatc |
218 |
Q |
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| T |
13591574 |
ctccactttcaatccaaggcttttataaataatctcttccactgaatcatgatcgtactcttctctgtagaacgagagatctaaaggatctctatgaatc |
13591475 |
T |
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| Q |
219 |
tccaaacagtgcttcgatgacttaagcatgtttcgtagcatggggttcttaaacctaatgaatccgcagtgccgattcagaaggaaatcacggaggtttt |
318 |
Q |
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| T |
13591474 |
tccaaacagtgcttcgatgacttaagcatgtttcgtagcatggggttcttaaacctaatgaatccgcagtgccgattcagaaggaaatcacggaggtttt |
13591375 |
T |
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| Q |
319 |
ggggtatggaatctgcatgacctagttggaatataaggcaccggttaccggtgcagagttgcaaagtgtctgcccta |
395 |
Q |
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| T |
13591374 |
gcggtatggaatctgcatgacctagttggaatataaggcaccggttaccggtgcagagttgcaaagtgtctgcccta |
13591298 |
T |
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