View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_11 (Length: 356)
Name: NF20936_low_11
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 24787808 - 24787570
Alignment:
| Q |
17 |
taatagcatgaatatttttacaaaattttcagattgatttgtaattttgaatagaaactagaaagagcataatacaaattcaacacaaatttcaataaaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24787808 |
taatagtatgaatatttttacaaaattttcagattaatttgtaatttttaatagaaactagaaagagcataatacaaattcaacacaaatttcaataaaa |
24787709 |
T |
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| Q |
117 |
aaggataaagaagccatatacttggagagtaagggtgatgatggaaatagaaaaggaaatatttctctgttgtgggctggggtgggaccaccggcagtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24787708 |
aaggataaagaagccatatacttggagagtaagggtgatgatggaaatagaaaaggaaatatttctctgttgtgggctggggagggaccaccggcagtga |
24787609 |
T |
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| Q |
217 |
cacgcggaagctcgtgcatgaagatgcttgaaaccataa |
255 |
Q |
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| T |
24787608 |
cacgcggaagctcgtgcatgaagatgcttgaaaccataa |
24787570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 24820453 - 24820691
Alignment:
| Q |
17 |
taatagcatgaatatttttacaaaattttcagattgatttgtaattttgaatagaaactagaaagagcataatacaaattcaacacaaatttcaataaaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24820453 |
taatagtatgaatatttttacaaaattttcagattaatttgtaatttttaatagaaactagaaagagcataatacaaattcaacacaaatttcaataaaa |
24820552 |
T |
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| Q |
117 |
aaggataaagaagccatatacttggagagtaagggtgatgatggaaatagaaaaggaaatatttctctgttgtgggctggggtgggaccaccggcagtga |
216 |
Q |
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| T |
24820553 |
aaggataaagaagccatatacttggagagtaagggtgatgatggaaatagaaaaggaaatatttctctgttgtgggctggggagggaccaccggcagtga |
24820652 |
T |
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| Q |
217 |
cacgcggaagctcgtgcatgaagatgcttgaaaccataa |
255 |
Q |
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| T |
24820653 |
cacgcggaagctcgtgcatgaagatgcttgaaaccataa |
24820691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 24787522 - 24787480
Alignment:
| Q |
302 |
attacataaaaacaataattgaacaacttttatttaaaatatt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24787522 |
attacataaaaacaataattgaacaacttttatttaaaatatt |
24787480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 24820739 - 24820781
Alignment:
| Q |
302 |
attacataaaaacaataattgaacaacttttatttaaaatatt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24820739 |
attacataaaaacaataattgaacaacttttatttaaaatatt |
24820781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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