View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20936_low_14 (Length: 292)

Name: NF20936_low_14
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20936_low_14
NF20936_low_14
[»] chr7 (1 HSPs)
chr7 (20-118)||(13778324-13778422)
[»] chr1 (2 HSPs)
chr1 (19-118)||(7428229-7428328)
chr1 (19-118)||(545838-545937)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 13778324 - 13778422
Alignment:
Q  20 cactacaacatttaggctataatgcaacgccacttttaaaggagtcaaataaaactgttgtgtaatttaactaagacaacacaattttaaatggtagtc 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13778324 cactgcaacatttaggctataatgcaacgccacttttaaaggagtcaaataaaactgttgtgtaatttaactaaaacaacacaattttaaatggtagtc 13778422  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 7428328 - 7428229
Alignment:
Q  19 tcactacaacatttaggctataatgcaacgccacttttaaaggagtcaaataaaactgttgtgtaatttaactaagacaacacaattttaaatggtagtc 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7428328 tcactacaacatttaggctataatggaacgccacttttaaaggagccaaataaaacttttgtgtaatttaactaagacaacacaattttaaatggtagtc 7428229  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 545937 - 545838
Alignment:
Q  19 tcactacaacatttaggctataatgcaacgccacttttaaaggagtcaaataaaactgttgtgtaatttaactaagacaacacaattttaaatggtagtc 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||||||||    
T  545937 tcactacaacatttaggctataatgcaacgtcacttttaaaggagtcaaataaaactgttgtctaatttgacaaaaacaacacaattttaaatggtagtc 545838  T

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