View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_16 (Length: 269)
Name: NF20936_low_16
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 15584651 - 15584519
Alignment:
| Q |
18 |
acatagtcatatatcctatccagaatatttcggtgtgtacannnnnnncgctcgcaaatacccagaaaattctttcgctgttcagtaggaatttctttgc |
117 |
Q |
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| T |
15584651 |
acatattcatatatcctatccagaatatttcggtgtgtacatttttttctctcgcaaatacccagaaaattctttctctgttcattaggaatttctttgc |
15584552 |
T |
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| Q |
118 |
tttctttcaattttgtgtattgataacaaggga |
150 |
Q |
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| T |
15584551 |
tttctttcaattttgtgtattgataacaaggga |
15584519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 15581619 - 15581513
Alignment:
| Q |
98 |
ttcagtaggaatttctttgctttctttcaattttgtgtattgataacaagggaaacacaatataatgaataacttcactacgcacatggtggtaaatatg |
197 |
Q |
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| T |
15581619 |
ttcattaggaatttcattgcattctttcaattttgtgtattgacaagaagggaaacacaggataataaataatttcaccacgaacatggtggtaaaaatg |
15581520 |
T |
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| Q |
198 |
atcaaac |
204 |
Q |
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| T |
15581519 |
atcaaac |
15581513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 15584524 - 15584487
Alignment:
| Q |
206 |
aagggatactgcaccgaaatctcttcaaatggttcttt |
243 |
Q |
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| T |
15584524 |
aagggatactgcaccgaaatctcttcaaatggttcttt |
15584487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 15550177 - 15550137
Alignment:
| Q |
18 |
acatagtcatatatcctatccagaatatttcggtgtgtaca |
58 |
Q |
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| T |
15550177 |
acatattcatatatcctatccagaaaatttcggcgtgtaca |
15550137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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