View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_2 (Length: 498)
Name: NF20936_low_2
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 46643905 - 46643768
Alignment:
| Q |
98 |
cttggtgttggcattatatatttagcaactagccttgctgagttattttataaatatttgaccagtttcaattcaaaatgtggcatctgaattggtatac |
197 |
Q |
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| T |
46643905 |
cttggtgttggcattatatatttagcaactagccttgctgagttattttataaatatttgaccagtttcaattcaaaatgtggcatctgaattggtatac |
46643806 |
T |
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| Q |
198 |
ttaaatataaaaataattcttttgataactatcaatga |
235 |
Q |
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| T |
46643805 |
ttaaatataaaaataattcttttgataactatcaatga |
46643768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 324 - 498
Target Start/End: Complemental strand, 46643719 - 46643550
Alignment:
| Q |
324 |
attatcaatgacaaatgaccgcacatatccgacattcattcaggatacaacnnnnnnnnnnntgaatctcatagcattgacccggcaagtgacgattttg |
423 |
Q |
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| T |
46643719 |
attatcaatgacaaatgaccgcacatatccgacattcattcacgatacaa-----aagaaaatgaatctcatagcattgacccggcaagcaacgattttg |
46643625 |
T |
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| Q |
424 |
tttatgaagcaacaattttgtcaatttcacctaaaacacgtacgtatatgacatgaccaagtaaaccctacctct |
498 |
Q |
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| T |
46643624 |
tttatgaagcaacaattttgtcaatttcacctaaaacacgtacgtatatgacatgatcaagtaaacactccctct |
46643550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 46641333 - 46641196
Alignment:
| Q |
99 |
ttggtgttggcattatatatttagcaactagccttgctgagttattttataaa-tatttgaccagtttcaattcaaaatgtggcatctgaattggtatac |
197 |
Q |
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| T |
46641333 |
ttggtgttggtattatatatttagcagttagccttgctgaattattttataaaatatttgacgagtttcaattcaaaatgtggcatttgaattggtaaac |
46641234 |
T |
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| Q |
198 |
ttaaatataaaaataattcttttgataactatcaatga |
235 |
Q |
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| T |
46641233 |
ttagctataaaaataattattttggtaattatcaatga |
46641196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 46641137 - 46641075
Alignment:
| Q |
398 |
cattgacccggcaagtgacgattttgtttatgaagcaacaattttgtcaatttcacctaaaac |
460 |
Q |
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| T |
46641137 |
cattgacccgacaagtgacgattttgtttatgaagcaacaattttgtcaatttcacctaaaac |
46641075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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