View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20936_low_21 (Length: 250)

Name: NF20936_low_21
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20936_low_21
NF20936_low_21
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-244)||(6007-6231)
[»] scaffold0178 (1 HSPs)
scaffold0178 (109-164)||(15711-15766)
[»] chr7 (3 HSPs)
chr7 (76-171)||(44182536-44182630)
chr7 (85-131)||(23854991-23855037)
chr7 (190-230)||(23186086-23186126)
[»] chr4 (7 HSPs)
chr4 (52-151)||(2401047-2401146)
chr4 (76-158)||(5924526-5924608)
chr4 (74-164)||(27952488-27952578)
chr4 (76-171)||(20291813-20291908)
chr4 (116-164)||(19936564-19936612)
chr4 (76-148)||(31372906-31372978)
chr4 (76-152)||(38751246-38751322)
[»] chr5 (4 HSPs)
chr5 (72-117)||(39933361-39933406)
chr5 (73-152)||(12295704-12295783)
chr5 (125-171)||(28499796-28499842)
chr5 (76-152)||(1420692-1420768)
[»] chr3 (3 HSPs)
chr3 (83-163)||(45010792-45010872)
chr3 (190-229)||(16276572-16276611)
chr3 (82-171)||(331835-331924)
[»] chr1 (4 HSPs)
chr1 (77-169)||(6735730-6735822)
chr1 (75-149)||(15444309-15444383)
chr1 (126-171)||(25554557-25554602)
chr1 (198-239)||(34332232-34332273)
[»] chr8 (3 HSPs)
chr8 (74-171)||(6354680-6354777)
chr8 (76-163)||(8688346-8688430)
chr8 (76-164)||(38779264-38779351)
[»] chr6 (1 HSPs)
chr6 (76-152)||(2284811-2284887)
[»] chr2 (2 HSPs)
chr2 (76-152)||(15492724-15492800)
chr2 (80-120)||(38871479-38871519)


Alignment Details
Target: scaffold0002 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 6231 - 6007
Alignment:
Q  20 ttgtctcgggataaaacatgtacaccatttaatcattattatatgcaaaaggtcaatttttaaatttattgaataaataatgtttatggtctataatata 119  Q
    ||||||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||    
T  6231 ttgtctcggggaaaaacatatacaccatttaattattattatatgcaaaaggtcaatttttaaatttattaaataaatgatatatatggtctataatata 6132  T
Q  120 gatttgatacataatttattcaataaatctaaataattattttttgcttatactttctccgtctcaaaagtaactgaatcttttgttcatttcatatata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  6131 gatttgatacataatttattcaataaatctaaataattattttttgcttatacttcctccgtctcaaaagtaactgaatcttttgttcatttcatatcta 6032  T
Q  220 ttaagaaaaatgtaaaagtgttgtt 244  Q
    ||||||||||||||||||| |||||    
T  6031 ttaagaaaaatgtaaaagtattgtt 6007  T

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Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 15711 - 15766
Alignment:
Q  109 tctataatatagatttgatacataatttattcaataaatctaaataattatttttt 164  Q
    ||||||||||||||||||||||  | |||||||||||||||||| ||| |||||||    
T  15711 tctataatatagatttgatacaacaattattcaataaatctaaaaaataatttttt 15766  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 44182630 - 44182536
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttttgcttata 171  Q
    |||||| ||| ||||||||||| |||| | ||||||| ||||  || ||||||||| ||||||||||| |||| ||| |||| |||||||||||||    
T  44182630 tttttatattcattgaataaatgatgtatttggtctacaataacgacttgatacatcatttattcaatgaatc-aaaaaattgttttttgcttata 44182536  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 23854991 - 23855037
Alignment:
Q  85 ttattgaataaataatgtttatggtctataatatagatttgatacat 131  Q
    ||||||||||| ||| || ||||||||||||||||||| ||||||||    
T  23854991 ttattgaataactaaggtatatggtctataatatagatctgatacat 23855037  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 23186086 - 23186126
Alignment:
Q  190 taactgaatcttttgttcatttcatatatattaagaaaaat 230  Q
    ||||||| || |||| |||||||||||||||||||||||||    
T  23186086 taactgagtcatttgctcatttcatatatattaagaaaaat 23186126  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 2401047 - 2401146
Alignment:
Q  52 tcattattatatgcaaaaggtcaatttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaa 151  Q
    ||||||||||| ||||||| | | |||||||||| ||| ||||||| |||| | ||||| |||||||||| |  |||||| ||||| | |||||||||||    
T  2401047 tcattattataagcaaaagttaactttttaaattcattcaataaatgatgtatttggtcaataatatagactaaatacatcatttaatgaataaatctaa 2401146  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 5924608 - 5924526
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataatta 158  Q
    ||||||||||||||||||||||||||| | | ||   ||||||||||| ||||||| ||||||| ||| ||| |||| |||||    
T  5924608 tttttaaatttattgaataaataatgtatgtagttcttaatatagattagatacattatttattgaatgaatttaaaaaatta 5924526  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 27952578 - 27952488
Alignment:
Q  74 aatttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattatttttt 164  Q
    |||||||| |||| |||||||| || ||| | |||||||||||||| ||   ||| |||| |||||||||||||||||| ||| |||||||    
T  27952578 aatttttagatttgttgaataactattgtatttggtctataatatatatcacatatataaattattcaataaatctaaaaaataatttttt 27952488  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 20291813 - 20291908
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttttgcttata 171  Q
    ||||||| | |||| ||||| |||||| | || ||||||||   || | ||||||| | |||||||||||||||||| | ||||||||||||||||    
T  20291813 tttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatctaaaaagttattttttgcttata 20291908  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 19936564 - 19936612
Alignment:
Q  116 tatagatttgatacataatttattcaataaatctaaataattatttttt 164  Q
    |||||| | ||||||| |||||||||||||||||||| | |||||||||    
T  19936564 tatagactagatacatcatttattcaataaatctaaaaagttatttttt 19936612  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 31372978 - 31372906
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatc 148  Q
    |||||||||  ||||||||||| || | | || |||||||||||| |  ||||||| ||||||||||||||||    
T  31372978 tttttaaataaattgaataaatgatatatttgatctataatatagttcagatacatcatttattcaataaatc 31372906  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 38751246 - 38751322
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaa 152  Q
    |||||||||||||||||||  |||| | |||  ||||||| |||||   ||||||||| ||||| ||||||||||||    
T  38751246 tttttaaatttattgaatagttaatatgtataatctataacatagacaagatacataaattatttaataaatctaaa 38751322  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 39933361 - 39933406
Alignment:
Q  72 tcaatttttaaatttattgaataaataatgtttatggtctataata 117  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||    
T  39933361 tcaatttttaatttcattgaataaataatgtatatggtctataata 39933406  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 12295704 - 12295783
Alignment:
Q  73 caatttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaa 152  Q
    ||||||||||||||||| ||||||| |||| | | || ||||||||||| |  |||||| ||||||| ||| ||||||||    
T  12295704 caatttttaaatttatttaataaattatgtatgtcgtttataatatagactacatacattatttattgaatgaatctaaa 12295783  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 28499842 - 28499796
Alignment:
Q  125 gatacataatttattcaataaatctaaataattattttttgcttata 171  Q
    ||||||| | ||||||||| |||||||| ||||||||||||||||||    
T  28499842 gatacattagttattcaatgaatctaaaaaattattttttgcttata 28499796  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 1420692 - 1420768
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaa 152  Q
    |||||| |||||||||| || | |||| | |||||||||||||||||  ||||||| | ||||| ||||||| ||||    
T  1420692 tttttagatttattgaacaacttatgtatttggtctataatatagataagatacatcaattattaaataaatttaaa 1420768  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 45010792 - 45010872
Alignment:
Q  83 atttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttt 163  Q
    |||||||| |||||| |||||| ||||||||| | || | | ||||||| | |||||||||||||||||| ||||| ||||    
T  45010792 atttattgtataaatgatgtttgtggtctatattctaaactagatacatcaattattcaataaatctaaaaaattaatttt 45010872  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 16276611 - 16276572
Alignment:
Q  190 taactgaatcttttgttcatttcatatatattaagaaaaa 229  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  16276611 taactgaatcttttattcatttcacatatattaagaaaaa 16276572  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 331835 - 331924
Alignment:
Q  82 aatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttttgcttata 171  Q
    |||||||||| ||||| |||| | |||||||||||| |||||  |||||| ||||| | ||| ||||||||   ||| ||||||||||||    
T  331835 aatttattgattaaatgatgtatgtggtctataataaagattatatacatcatttaatgaatgaatctaaaatgttaatttttgcttata 331924  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 6735730 - 6735822
Alignment:
Q  77 ttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttttgctta 169  Q
    ||||| ||| |||||||||||||||| | ||||||||||||||   |  ||| || |||||||||||||||||||| | ||  ||||||||||    
T  6735730 ttttagattcattgaataaataatgtatgtggtctataatataagatgcatatatcatttattcaataaatctaaaaagttgatttttgctta 6735822  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 15444383 - 15444309
Alignment:
Q  75 atttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatct 149  Q
    ||||||| |||||| |||||| | || | | || ||||||||||||||| ||||||| |||||||| ||||||||    
T  15444383 atttttagatttatggaataactgatatatttgatctataatatagattagatacatcatttattcgataaatct 15444309  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 25554602 - 25554557
Alignment:
Q  126 atacataatttattcaataaatctaaataattattttttgcttata 171  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||||    
T  25554602 atacatcatttattcaatgaatctaaaaagttattttttgcttata 25554557  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 34332273 - 34332232
Alignment:
Q  198 tcttttgttcatttcatatatattaagaaaaatgtaaaagtg 239  Q
    |||||||||||||||| | ||||||||||||||||| |||||    
T  34332273 tcttttgttcatttcacacatattaagaaaaatgtataagtg 34332232  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 6354680 - 6354777
Alignment:
Q  74 aatttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttttgcttata 171  Q
    |||||||  ||||||||||||| |||||| |||| | |||| | |||||   |||||||| ||||||||| |||||||| ||||| || || ||||||    
T  6354680 aattttttgatttattgaataattaatgtatatgatatatattctagatcgaatacataaattattcaatgaatctaaaaaattaattatttcttata 6354777  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 8688346 - 8688430
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattattttt 163  Q
    |||||||||||||||||||   ||||| | ||| ||||| |||||||   |||||| | |||||||||||||||||| ||| ||||||    
T  8688346 tttttaaatttattgaata---aatgtatttggcctatattatagatcaaatacatcacttattcaataaatctaaaaaatgattttt 8688430  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 38779264 - 38779351
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaataattatttttt 164  Q
    ||||||||||||||||||||||||||| |||  ||||| ||||| | | ||||||| | ||||| ||||||  |||| |||| ||||||    
T  38779264 tttttaaatttattgaataaataatgtatatattctat-atataaactagatacattaattatttaataaacttaaaaaattgtttttt 38779351  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 2284811 - 2284887
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaa 152  Q
    ||||| |||||||||||||| |||||| | || | ||||||||||||  ||||||| | ||||| |||||| |||||    
T  2284811 ttttttaatttattgaataattaatgtatctgatttataatatagatcagatacattaattatttaataaacctaaa 2284887  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 15492724 - 15492800
Alignment:
Q  76 tttttaaatttattgaataaataatgtttatggtctataatatagatttgatacataatttattcaataaatctaaa 152  Q
    |||||| ||| ||||||||| | || | | || |||||||||||| || ||||||||| ||||||||||||| ||||    
T  15492724 tttttagattgattgaataactgatttatttgatctataatataggttagatacataaattattcaataaatttaaa 15492800  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 38871479 - 38871519
Alignment:
Q  80 taaatttattgaataaataatgtttatggtctataatatag 120  Q
    |||||||||||||||||| |||| | |||||||||||||||    
T  38871479 taaatttattgaataaatgatgtatttggtctataatatag 38871519  T

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