View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_22 (Length: 250)
Name: NF20936_low_22
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 28485186 - 28484954
Alignment:
| Q |
11 |
gaaggagaccctggtaattcggagtttagctgggaggtaagtaaagtctgtctgatcaacattcagctgatcgaccatggatctattgctctaataaaaa |
110 |
Q |
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| T |
28485186 |
gaaggagaccctggtaattcggagtttagctgggaggtaagtaaagtctgtctgatcaacattcagctgatcgaccatggatctattgctctaataaaaa |
28485087 |
T |
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| Q |
111 |
atactcaataactatatagtttccagatagaatttcttaccaatttgaagaaaagatgtccacaaagaaccaccaaacaaaactgcatggttccataaat |
210 |
Q |
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| T |
28485086 |
atactcaataactatatagtttcctgatagaatttcttaccaatttgaagaaaagatgtccacaaagaaccaccaaacaaaactgcatggttccataaat |
28484987 |
T |
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| Q |
211 |
ccaaacatgatttctcctcactaagaataattt |
243 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
28484986 |
ccaaacatgatttctcctcactaaaaataattt |
28484954 |
T |
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