View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_3 (Length: 494)
Name: NF20936_low_3
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 17996208 - 17995781
Alignment:
| Q |
18 |
ggaactgttccatcataatgatgttttggaggtgcaacaagctttggttatggaaggcattcaaggtgttaaagtcacagagatgggagacagaaagatg |
117 |
Q |
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| T |
17996208 |
ggaactgttccatcagaaggatgctttggaggtgcaacaagctttggttatggaaggcattcgaggtgttaaagtcatagagatgggagacagaaagatg |
17996109 |
T |
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| Q |
118 |
ctcctgcatattgaatgtatgaaggatattgatccagttcacaatagccatctagcttggtgttattcaatgttttcttcggttagaaggtggacacctc |
217 |
Q |
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| T |
17996108 |
cttttgcatattgaaggtatgaaggatattgacccggttcgcaatagccatctagcttggtgatatt-------ttcttcggttagaaggtggacacctc |
17996016 |
T |
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| Q |
218 |
agttggtggcaaatagtagggcggtttggctccatgttcatggtattcccctccatgtttgggatgaacccttgttcaagaagattggctctttgtttgg |
317 |
Q |
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| T |
17996015 |
agttggtggcagatagtatggcggtttggctccatgttcatggtattcccctccatgtttgggatgaacccttgttcaagaagattgactctttgtttgg |
17995916 |
T |
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| Q |
318 |
ggtattcttagattttgatgattacaccattgggagaaagaggatggatgtaaccatgatccaagtttcttttaagaggagagcggtgattgatgagcac |
417 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
17995915 |
ggtgttcttagattttgatgattacacaattgggagaaagaggttggatgtagccatgatccaagtttcttctaagaggagaggggtgattgatgagcac |
17995816 |
T |
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| Q |
418 |
ctgaatctgaaggttgtggttatggatttttgttt |
452 |
Q |
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| T |
17995815 |
ctgaatctgaaggttatgggtatggatttttgttt |
17995781 |
T |
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