View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_32 (Length: 220)
Name: NF20936_low_32
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6798997 - 6799067
Alignment:
| Q |
1 |
ttaggacttgagaacacaaactcctttccaaattgtgttaagacaatgatgcatacaagtatttgtgctaa |
71 |
Q |
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| T |
6798997 |
ttaggacttgagaacacatattccttgccaaattgtgttaggacaatgatgcatagaagtatttgtgctaa |
6799067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 6799346 - 6799401
Alignment:
| Q |
165 |
atattcccttatttttgtacgtgtttctcttcccctattttgatcattgaaatatc |
220 |
Q |
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| T |
6799346 |
atattccgttatttttgtatgtgtttctcttcccatattttgatcattaaaatatc |
6799401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 6798946 - 6798992
Alignment:
| Q |
77 |
tgcatagaagtatttctgaacaaggatgccttctgaagacgatgatg |
123 |
Q |
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| T |
6798946 |
tgcatagaagtatttctgaacaaggatgtcttctgaagacaatgatg |
6798992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 6799042 - 6799093
Alignment:
| Q |
118 |
atgatgcatagaagtatttgtgctaaattggagtgttgtgattcaatatattc |
170 |
Q |
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| T |
6799042 |
atgatgcatagaagtatttgtgct-aattggaatgtggtgattcaatttattc |
6799093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 8573237 - 8573281
Alignment:
| Q |
79 |
catagaagtatttctgaacaaggatgccttctgaagacgatgatg |
123 |
Q |
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| T |
8573237 |
catagaagtatttctgaacaaggatgtcgtctgaagacaatgatg |
8573281 |
T |
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