View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_33 (Length: 212)
Name: NF20936_low_33
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 7129438 - 7129250
Alignment:
| Q |
10 |
aagaatatatgtctaaacttccaagattggattggaatcttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaatgca |
109 |
Q |
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| T |
7129438 |
aagaaaatatgtctaaacttccaagattggattggaatcttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaacgca |
7129339 |
T |
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| Q |
110 |
aaggagacaaatttctatgaattagacttattgatttgtacatacactgccaattatctaatctcacttcaccaagagaacgaataaca |
198 |
Q |
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| T |
7129338 |
aaggagacaaatttctatgaattagacttatcgatttgtacatccactgccaattatctaatctcacttcaccaagagaacgaataaca |
7129250 |
T |
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Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 3408687 - 3408859
Alignment:
| Q |
18 |
atgtctaaacttccaagattggattggaatcttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaatgcaaaggag-- |
115 |
Q |
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| T |
3408687 |
atgtctaaacttccaagattggattggaa--------caacaaccggcatttgattta--ggtaaagagacgacttgaaaaggaagaatgcaaaggagga |
3408776 |
T |
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| Q |
116 |
acaaatttctatgaattagacttattgatttgtacatacactgccaattatctaatctcacttcaccaagagaacgaataaca |
198 |
Q |
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| T |
3408777 |
acaaatttctataaagtagacttattaatttgtacatccaccgtcaattatctaatgtcacttcaccaagagaacgaataaca |
3408859 |
T |
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