View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_4 (Length: 481)
Name: NF20936_low_4
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_4 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 10557039 - 10557494
Alignment:
| Q |
10 |
aagaatatcatctctaactacgacgcaccagaaggtgtcgaagttaggggaagatatgatgcagagtttgcaaaaattctaaccaaagatgctttgaaat |
109 |
Q |
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| T |
10557039 |
aagaatatcatctctaactacgatgcaccagaaggcgtcgaagttaggggaagatatgatgcagagtttgcaaaaattctaaccaaagatgctttgaaat |
10557138 |
T |
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| Q |
110 |
ttgttgctgatttgcaacgtgagttcagaaaccatataaagtatgcactagagtgtagaaaagaagcaaagagaaggtacaatgaaggagctctaccagg |
209 |
Q |
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| T |
10557139 |
ttgttgctgatttgcaacgtgagttcagaaaccatataaagtatgcactagagtgtagaaaagaagcaaagagaaggtacaatgaaggagctctaccagg |
10557238 |
T |
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| Q |
210 |
ttttgatccagcaactagatacataagagaaggagattggatctgtgcacctgttccaccagctgtttctgataggaaagttgagattactggccctgtt |
309 |
Q |
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| T |
10557239 |
ttttgatccagcaactagatacataagagaaggagattggatctgtgcacctgttccaccagctgtttctgataggaaagttgagattactggccctgtt |
10557338 |
T |
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| Q |
310 |
gagagaaagatgatcatcaatgctcttaactctggagctaaagtctttatggttagtattagtactataacatttacagtcatatgcaagtgtttac-tt |
408 |
Q |
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| T |
10557339 |
gagagaaagatgatcatcaatgctcttaactctggagctaaagtctttatggttagcattagtactataacatttacagtcctatgcaagtgtttacttt |
10557438 |
T |
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| Q |
409 |
ttctgtggtcaagtagtatagtggatagaaattcacattttaaggtggataagtgg |
464 |
Q |
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| T |
10557439 |
ttctgtggtcaagtagtatagtggctagaaattcaacttttaaggtggataagtgg |
10557494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 12100116 - 12100160
Alignment:
| Q |
416 |
gtcaagtagtatagtggatagaaattcacattttaaggtggataa |
460 |
Q |
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| T |
12100116 |
gtcaagtagtatagtggctagaaattcactttttaaggtgaataa |
12100160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 55279 - 55234
Alignment:
| Q |
418 |
caagtagtatagtggatagaaattcacattttaaggtggataagtg |
463 |
Q |
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| T |
55279 |
caagtagcatagtagatagaaattcacattttaaagtgaataagtg |
55234 |
T |
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