View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20936_low_5 (Length: 461)
Name: NF20936_low_5
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20936_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 219 - 451
Target Start/End: Original strand, 7740246 - 7740478
Alignment:
| Q |
219 |
cgaggtttttattgaaaaattgggtcacctacgttattgctaagtttgtagactttgtataaactatttaatctaattttatatacgatctctccataac |
318 |
Q |
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| T |
7740246 |
cgaggtttttattgaaaaattgggtcacctacgttgttgctaagttcgtagactttgtataaactatttaatctaattttatatacgatctctccataat |
7740345 |
T |
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| Q |
319 |
tttcatactgtatatgaaatatttaannnnnnnagtgaaagaaaatacggaattgaaaaacggtaaatgtatttctagttttataaaatttaaaattaat |
418 |
Q |
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| T |
7740346 |
tttcatactgtatatgaaatatttaattttttgactcaaagaaaatacgggattgaaaaacggtaaatgtatttctagttttataaaatttaaaattaat |
7740445 |
T |
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| Q |
419 |
attttggtatgcttctccttttcaacacctttg |
451 |
Q |
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| T |
7740446 |
attttggtatgcttctccttttcaacacctttg |
7740478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 7740047 - 7740216
Alignment:
| Q |
19 |
ccagtatgtatctgtgttagtgaaagttggtcaaacaagtaggcttaaaataatgaggatatgatcct-ttgaagacatagtaatcaaagatgtatactt |
117 |
Q |
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| T |
7740047 |
ccagtatgtatctgttttagtgaaagttggtcaaacaagtaggcttaaaataatgag-atatgatcctcttcaagacataataatcaaagatgtatactt |
7740145 |
T |
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| Q |
118 |
caaccattgatgcatccaaccatatcataaaattaggaggcttacttggtgggggtttttgccctgccccc |
188 |
Q |
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| T |
7740146 |
caaccattgatgcatccaaccatatcataaaattaggaggcttacttggtgggggtttttgcccagccccc |
7740216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 7731920 - 7732065
Alignment:
| Q |
27 |
tatctgtgttagtgaaagttggtcaaacaagtaggcttaaaataatgaggatatgatcctttgaagacatagtaatcaaagatgtatacttcaaccattg |
126 |
Q |
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| T |
7731920 |
tatctgttttagtgaaagttggtcaaacaaggaggcttaaaataataaggttatgacccttgaaagacatcgtaatcaaagatgtatacttcaaccatga |
7732019 |
T |
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| Q |
127 |
atgcatccaaccatatcataaaattaggaggcttacttggtggggg |
172 |
Q |
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| T |
7732020 |
atacatccaaccatatcataaaataaggaggtttacctggttgggg |
7732065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 7732129 - 7732205
Alignment:
| Q |
249 |
acgttattgctaagtttgtagactttgtataaactatttaatctaattttatatacgatctctccataactttcata |
325 |
Q |
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| T |
7732129 |
acgttgtttctaagttcatagactttgtataaactatctaatctaattttatatacgatctctccataattttcata |
7732205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 7732344 - 7732411
Alignment:
| Q |
373 |
gaaaaacggtaaatgtatttctagttttataaaattt-aaaattaatattttggtatgcttctccttt |
439 |
Q |
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| T |
7732344 |
gaaaaatggtaaatgtatttttagtttgataaaattttaaaattaatattttggtatgctcctccttt |
7732411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 7727748 - 7727811
Alignment:
| Q |
27 |
tatctgtgttagtgaaagttggtcaaacaagtaggcttaaaataatgaggatatgatcctttgaa |
91 |
Q |
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| T |
7727748 |
tatctgttttagtgaaagttggtcaaacagaaaggcttaaaataatga-gatatgaccctttgaa |
7727811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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