View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20936_low_6 (Length: 441)

Name: NF20936_low_6
Description: NF20936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20936_low_6
NF20936_low_6
[»] chr2 (4 HSPs)
chr2 (239-430)||(45623496-45623686)
chr2 (22-143)||(45623823-45623944)
chr2 (41-126)||(9810065-9810150)
chr2 (151-186)||(45623739-45623774)
[»] chr8 (6 HSPs)
chr8 (22-143)||(7934321-7934442)
chr8 (22-143)||(34579242-34579363)
chr8 (318-430)||(7934719-7934831)
chr8 (318-430)||(34578853-34578965)
chr8 (239-318)||(7934579-7934658)
chr8 (239-318)||(34579026-34579105)
[»] chr5 (2 HSPs)
chr5 (340-430)||(29846966-29847055)
chr5 (340-430)||(29867160-29867249)
[»] chr7 (1 HSPs)
chr7 (22-126)||(39939431-39939534)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 239 - 430
Target Start/End: Complemental strand, 45623686 - 45623496
Alignment:
Q  239 ttatggtaatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaatagggattttgcaatattcagtttaa 338  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  45623686 ttatggtaatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaatagggattta-caatattcagtttaa 45623588  T
Q  339 gttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga 430  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45623587 gttgaattgcatctttaacagtggtagtctactagctttggtggtgtatgctatgatacaatttaaactcaaaggatcacaagttttgatga 45623496  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 45623944 - 45623823
Alignment:
Q  22 gccgccgttctcagatcgccatcgccgccgccgtgcagatgtaacccatcaccgacccacaacctcttcttctccatctccaccgttcgtccatctctac 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45623944 gccgccgttctcagatcgccatcgccgccgccgtgcagttgtaacccatcaccgacccacaaccccttcttctccatctccaccgttcgtccatctctac 45623845  T
Q  122 cggcgttttggtttgatttccg 143  Q
    ||||||||||||||||||||||    
T  45623844 cggcgttttggtttgatttccg 45623823  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 9810150 - 9810065
Alignment:
Q  41 catcgccgccgccgtgcagatgtaacccatcaccgacccacaacctcttcttctccatctccaccgttcgtccatctctaccggcg 126  Q
    |||||||| | |||||||| ||||||||||||||||  ||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  9810150 catcgccgactccgtgcagttgtaacccatcaccgaatcacaaccccttcttctccatctccacctttcctccatctctactggcg 9810065  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 45623774 - 45623739
Alignment:
Q  151 tgtctctggcggtcatgaggtggagggatggttggg 186  Q
    ||||||||||||||||||||| ||||||||||||||    
T  45623774 tgtctctggcggtcatgaggtagagggatggttggg 45623739  T

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Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 7934321 - 7934442
Alignment:
Q  22 gccgccgttctcagatcgccatcgccgccgccgtgcagatgtaacccatcaccgacccacaacctcttcttctccatctccaccgttcgtccatctctac 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  7934321 gccgccgttctcagatcgccatcgccgccgccgtgcagttgtaacccatcacagacccacaaccctttcttctccatctccaccgttcgtccatctctat 7934420  T
Q  122 cggcgttttggtttgatttccg 143  Q
    ||||||||||||||||||||||    
T  7934421 cggcgttttggtttgatttccg 7934442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 34579363 - 34579242
Alignment:
Q  22 gccgccgttctcagatcgccatcgccgccgccgtgcagatgtaacccatcaccgacccacaacctcttcttctccatctccaccgttcgtccatctctac 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  34579363 gccgccgttctcagatcgccatcgccgccgccgtgcagttgtaacccatcatcgacccacaaccccttattctccatctccaccgttcgtccatctctac 34579264  T
Q  122 cggcgttttggtttgatttccg 143  Q
    |||||||||| |||||||||||    
T  34579263 cggcgttttgatttgatttccg 34579242  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 318 - 430
Target Start/End: Original strand, 7934719 - 7934831
Alignment:
Q  318 attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca 417  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7934719 attttgcaatattcagtttcagttgaattgcagctttaacagtggtagtctactggctttggtggtgtatgctaagatacaatttaaactcaaaggatca 7934818  T
Q  418 caagttttgatga 430  Q
    |||||| ||||||    
T  7934819 caagttctgatga 7934831  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 318 - 430
Target Start/End: Complemental strand, 34578965 - 34578853
Alignment:
Q  318 attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca 417  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34578965 attttgcaatattcaatttcatttgaattgcagctttaacagtggtaatctactagctttggtggtgtattctaagatacaatttaaactcaaaggatca 34578866  T
Q  418 caagttttgatga 430  Q
    |||||||||||||    
T  34578865 caagttttgatga 34578853  T

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Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 7934579 - 7934658
Alignment:
Q  239 ttatggtaatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaataggga 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7934579 ttatggtaatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaataggga 7934658  T

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Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 34579105 - 34579026
Alignment:
Q  239 ttatggtaatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaataggga 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34579105 ttatggtaatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaataggga 34579026  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 29846966 - 29847055
Alignment:
Q  340 ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga 430  Q
    |||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846966 ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga 29847055  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 29867160 - 29867249
Alignment:
Q  340 ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga 430  Q
    |||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29867160 ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcgcaagttttgatga 29867249  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39939431 - 39939534
Alignment:
Q  22 gccgccgttctcagatcgccatcgccgccgccgtgcagatgtaacccatcaccgacccacaacctcttcttctccatctccaccgttcgtccatctctac 121  Q
    ||||||||||||||| | | ||||||| |||||| ||| ||||||||||||||||  ||||||| ||||||||||||||||||| ||| |||||||||||    
T  39939431 gccgccgttctcagaccac-atcgccgacgccgtacagttgtaacccatcaccgaatcacaaccccttcttctccatctccacctttcctccatctctac 39939529  T
Q  122 cggcg 126  Q
    |||||    
T  39939530 cggcg 39939534  T

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