View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20937_high_1 (Length: 339)
Name: NF20937_high_1
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20937_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 41217252 - 41217570
Alignment:
| Q |
5 |
gaggagcacagaaacaccccaggaccatcacattgacattacaaccgagagcaaccacacaagggaaatttgaaactacatgtcaacctaaaatctatat |
104 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41217252 |
gaggagcactaaaacaccctaggaccatcacattgacattacaaccgagagcaaccacacaagggaaatttgaaactatatgtcaacctaaaatctatat |
41217351 |
T |
|
| Q |
105 |
tccacatatgaatcacatctcttatatatccaacatttgactcattcatagtcaacgtgagattgtatcgccatcacatccaacataacacgtctcatga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41217352 |
tccacatatgaatcacatctcttatatatccaacatttgactcattcatagtcaacgtaagattgtatcgccatcacatccaacataacacgtctcatga |
41217451 |
T |
|
| Q |
205 |
ctataacatcnnnnnnnnc--ttgatataaggattcaaacacataatcaactccctctctccaccaaactagagcagggatctaataccacttgctgggg |
302 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41217452 |
ctataacatcaaaaaaaacttttgatataaggattcaaacacataatcaactccctctctccaccaaactagagcagggatctaataccacttgctgggg |
41217551 |
T |
|
| Q |
303 |
gagtctgaagagcgtcgag |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41217552 |
gagtctgaagagcgtcgag |
41217570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 1418055 - 1418100
Alignment:
| Q |
110 |
atatgaatcacatctcttatatatccaacatttgactcattcatag |
155 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| |||||||||||| |
|
|
| T |
1418055 |
atatgaatcaaatatcttatatatccaatattttactcattcatag |
1418100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 21488856 - 21488893
Alignment:
| Q |
117 |
tcacatctcttatatatccaacatttgactcattcata |
154 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21488856 |
tcacatctcttatatatccaacattttactcattcata |
21488893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 11199999 - 11199942
Alignment:
| Q |
109 |
catatgaatcacatctcttatatatccaacatttgactcattcatagtcaacgtgaga |
166 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| || |||||||| ||| |||||| |
|
|
| T |
11199999 |
catatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgaga |
11199942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University