View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20937_high_3 (Length: 310)
Name: NF20937_high_3
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20937_high_3 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 21374 - 21667
Alignment:
| Q |
19 |
gaagttcaggtgtccatcttaaacgaggaacctttgatcttacatattgtctcacaacaccttcccttccacaactactcattctttcaaatccaaaagg |
118 |
Q |
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| T |
21374 |
gaagttcaggtgtccatcttaaacgaggaacctttgatcttacatattgtctcacaacaccttcccttccacaactactcattctttcaaatccaaaagg |
21473 |
T |
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| Q |
119 |
gtcctc------------aaaacactctttctataagattctactttgcttcatatataagagtatgaaaagtaatagaagaagaaaacagaatcatgat |
206 |
Q |
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| T |
21474 |
gtcctcaaaaaaaccctcaaaacactctttctataagattctactttgcttcatatataagagtatgaaaagtaatagaagaagaaaacagaatcatgat |
21573 |
T |
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| Q |
207 |
tgtgaaaggttgaaaatatcgagagaaagggacttgacaaaggaagagtctgcaaattccttaacatgtcactgataataccttatgccctatg |
300 |
Q |
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| T |
21574 |
tgtgaaaggttgaaaatatcgagagaaagggacttgacaaaggaagagtctgcaaattccttaacatgtcactgataataccttatgccctatg |
21667 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25080559 - 25080630
Alignment:
| Q |
19 |
gaagttcaggtgtccatcttaaacgaggaacctttgatcttacatattgtctcacaacaccttcccttccac |
90 |
Q |
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| T |
25080559 |
gaagttcatgtgtccatcttaaacaaggaacctttggtcttacatattgtctcgccacaccttcccttccac |
25080630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25138528 - 25138599
Alignment:
| Q |
19 |
gaagttcaggtgtccatcttaaacgaggaacctttgatcttacatattgtctcacaacaccttcccttccac |
90 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
25138528 |
gaagttcatgtgtccatcttaaacaaggaacctttggtcttacatattgtctcgccacaccttcccttccac |
25138599 |
T |
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