View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20937_high_5 (Length: 262)
Name: NF20937_high_5
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20937_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 40810671 - 40810907
Alignment:
| Q |
16 |
caaaaggatgcacatcagaattgtaatgtgaatctaattgtttctggtgtggtctgcagagaagtaattgtgttactagggtcttaacgtgatgcacttg |
115 |
Q |
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| T |
40810671 |
caaaaggatgcacatcagaattgtcaagtgcatctaattgtttctggtgtggtctgcagagaaggaattgtgttactagggtcttaacgtgatgcacttg |
40810770 |
T |
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| Q |
116 |
gttgtgatgcgtgtatttcagtagttatcttgagttgtttatctttttgaatgccacttctcatctgcttagaaagtattctcctggcttgattgttatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40810771 |
gttgtgatgcgtgtatttcagtagttatcttgagttgtttatctttttgaatgccacttctcatctgcttagaaagtattctcctggcttgattgttatg |
40810870 |
T |
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| Q |
216 |
cctttgtgcaataatgtatgtttctttgacatctctg |
252 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
40810871 |
cctttgtgcaataatgtatgtttctttgacatttctg |
40810907 |
T |
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