View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20937_low_10 (Length: 242)
Name: NF20937_low_10
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20937_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 6248981 - 6248847
Alignment:
| Q |
91 |
ggattaattcaaagcttgtgcttcgtaaaagtaaaaaattgaacttgatgactaccctatttcctatatacagtgtactactcatctactcttatcatca |
190 |
Q |
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| T |
6248981 |
ggattaattcaaagcttgtgcttcgtaaaagtaaaaaattgaacttgatgactaccctatttcctatatagagtgtactactcatctactcttatcatca |
6248882 |
T |
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| Q |
191 |
attaattaaacctagttaaaataatactattaaat |
225 |
Q |
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| T |
6248881 |
attaattaaacctagttaaaataatactattaaat |
6248847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6249071 - 6249020
Alignment:
| Q |
1 |
catagtctatctctctgtggtgttggtagagtttcatagtaaaatcacatca |
52 |
Q |
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| T |
6249071 |
catagtctatctctctgtggtgttggtagagtttcatagtaaaatcacatca |
6249020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 43032906 - 43032799
Alignment:
| Q |
118 |
aaagtaaaaaattgaacttgatgactaccctatttcctatatacagtgtactactcatctactcttatcatcaattaattaaacctagttaaaataatac |
217 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43032906 |
aaagtaaaaatctgaacttgatggctaccctatttcctatatacagtgtactactcatctactcttatcatcaattaattaaacctagttaaaaaaatac |
43032807 |
T |
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| Q |
218 |
tattaaat |
225 |
Q |
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|| ||||| |
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| T |
43032806 |
tactaaat |
43032799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43047227 - 43047178
Alignment:
| Q |
1 |
catagtctatctctctgtggtgttggtagagtttcatagtaaaatcacat |
50 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43047227 |
catagtctgtctctctgtggtgttggtagagtttcatagtaaaatcacat |
43047178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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