View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20937_low_13 (Length: 222)

Name: NF20937_low_13
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20937_low_13
NF20937_low_13
[»] chr2 (2 HSPs)
chr2 (10-208)||(32425436-32425655)
chr2 (31-73)||(32421305-32421347)
[»] chr1 (2 HSPs)
chr1 (71-174)||(1543507-1543610)
chr1 (31-73)||(1543630-1543672)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 32425655 - 32425436
Alignment:
Q  10 agtagcataggcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata----------------------aagggctcacctag 87  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||| |||    
T  32425655 agtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcatatggaactgcttgcccatttataaagggctcac-tag 32425557  T
Q  88 tgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattcacatcatgttattctca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32425556 tgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattcacatcatgttattctca 32425457  T
Q  188 ggacagcgttgaagttattca 208  Q
    | |||||||||||||||||||    
T  32425456 gtacagcgttgaagttattca 32425436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 32421347 - 32421305
Alignment:
Q  31 gagcattgttcctaacccacacctcatgatacttaggatcata 73  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  32421347 gagcattgttcctaacccactcctcatgatacttgggatcata 32421305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 1543610 - 1543507
Alignment:
Q  71 ataaagggctcacctagtgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattc 170  Q
    ||||||||||| ||| | ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  1543610 ataaagggctcccctggcgagagggaaacaaacaagtccaccaagcatcatgttatgtaccttttacaacaagaaatattatatgctatggaaagacttc 1543511  T
Q  171 acat 174  Q
    ||||    
T  1543510 acat 1543507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 1543672 - 1543630
Alignment:
Q  31 gagcattgttcctaacccacacctcatgatacttaggatcata 73  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  1543672 gagcattgttcctaacccactcctcatgatacttgggatcata 1543630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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