View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20937_low_2 (Length: 430)

Name: NF20937_low_2
Description: NF20937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20937_low_2
NF20937_low_2
[»] chr4 (8 HSPs)
chr4 (12-283)||(53679807-53680078)
chr4 (270-413)||(53678560-53678703)
chr4 (182-222)||(47645245-47645285)
chr4 (181-224)||(50721726-50721769)
chr4 (189-223)||(193587-193621)
chr4 (181-223)||(7632444-7632486)
chr4 (189-223)||(31574922-31574956)
chr4 (187-223)||(16019529-16019565)
[»] chr6 (1 HSPs)
chr6 (181-224)||(33551659-33551702)
[»] chr7 (3 HSPs)
chr7 (181-223)||(31445364-31445406)
chr7 (189-223)||(3683586-3683620)
chr7 (181-223)||(18505820-18505862)
[»] chr5 (4 HSPs)
chr5 (181-220)||(9168150-9168189)
chr5 (181-223)||(7287172-7287214)
chr5 (181-223)||(37172737-37172779)
chr5 (180-220)||(18692791-18692831)
[»] chr3 (3 HSPs)
chr3 (181-220)||(51672909-51672948)
chr3 (181-222)||(52417812-52417853)
chr3 (181-221)||(49021758-49021798)
[»] chr1 (4 HSPs)
chr1 (181-223)||(9987998-9988040)
chr1 (189-223)||(33076174-33076208)
chr1 (181-218)||(2206201-2206238)
chr1 (187-223)||(41677307-41677343)
[»] chr8 (1 HSPs)
chr8 (159-220)||(11180332-11180393)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 53680078 - 53679807
Alignment:
Q  12 agagatgagcgacatttgaaataaaaaggtaaaaagaagaagagtgagaagagaatcgagacatatacatattgatagtagtggagtgaactttaatgaa 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53680078 agagatgagcgacatttgaaataaaaagataaaaagaagaagagtgagaagagaatcgagacatatacatatagatagtagtggagtgaactttaatgaa 53679979  T
Q  112 taatgcaatagagtttcaagaccctaaattctccgggtatagatttaagaaataatatttgaacaattatttctttttcatactcacattgtatttttat 211  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  53679978 taatgcaatagagtttcaagaccctaaattcttcaagtatagatttaagaaataatatttgaacaattatttatttttcatactcactttgtatttttat 53679879  T
Q  212 tttctctctctacaagagtatatattattaataacgcggtagtagtttcatattcgtaaatggtataatttt 283  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53679878 tttctctctctataagagtatatattattaataacgcggtagtagtttcatattcgtaaatggtataatttt 53679807  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 270 - 413
Target Start/End: Complemental strand, 53678703 - 53678560
Alignment:
Q  270 aatggtataattttgtgtcgactgtattaaataatgatgttggttttgttcacattaaatcaagcgtagcatatattaaatttcattgaacgtgcaaaga 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  53678703 aatggtataattttgtgtcgactgtattaaataatgatgttggttttgttcacattaaatcaagcgtagcatatattaaatttcattgaacgtgcacaga 53678604  T
Q  370 taaattgtcctctttactttctagctataatagattcataaaaa 413  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  53678603 taaattgtcctctttactttctagttataatagattcataaaaa 53678560  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 47645285 - 47645245
Alignment:
Q  182 ttctttttcatactcacattgtatttttattttctctctct 222  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  47645285 ttctctttcatacttacattgtatttttattttctctctct 47645245  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 50721769 - 50721726
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctctac 224  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||    
T  50721769 tttctctttcatactcacattatatttttactttctctctctac 50721726  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 193587 - 193621
Alignment:
Q  189 tcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||| |||||||||||||||||||||||    
T  193587 tcatactcacactgtatttttattttctctctcta 193621  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 7632486 - 7632444
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||    
T  7632486 tttctctttcatactcacattatatttttactttctctctcta 7632444  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 31574956 - 31574922
Alignment:
Q  189 tcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||| |||||||||||||||||||||    
T  31574956 tcatactcacattatatttttattttctctctcta 31574922  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 16019529 - 16019565
Alignment:
Q  187 tttcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  16019529 tttcatactcacattatatttttactttctctctcta 16019565  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 33551659 - 33551702
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctctac 224  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  33551659 tttctttttcatactcaaattgtatttttatattctctctctac 33551702  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 31445364 - 31445406
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  31445364 tttctttttcatactcacattatatttttactttctctctcta 31445406  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 3683586 - 3683620
Alignment:
Q  189 tcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||| |||||||||||||||||||||    
T  3683586 tcatactcacattatatttttattttctctctcta 3683620  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 18505820 - 18505862
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||||||||||| | |||||| ||||||||||||    
T  18505820 tttctttttcatactcacattatgtttttagtttctctctcta 18505862  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 9168189 - 9168150
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctct 220  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  9168189 tttctctttcatactcacattatatttttattttctctct 9168150  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 7287214 - 7287172
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||    
T  7287214 tttctctttcatactcacattatatttttactttctctctcta 7287172  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37172779 - 37172737
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||    
T  37172779 tttctttctcatactcacattgtgtttttaatttctctctcta 37172737  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 18692791 - 18692831
Alignment:
Q  180 atttctttttcatactcacattgtatttttattttctctct 220  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  18692791 atttttttttcatactcacattttattcttattttctctct 18692831  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 51672909 - 51672948
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctct 220  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  51672909 tttctttttcatactcacattatatttttattctctctct 51672948  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 52417812 - 52417853
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctct 222  Q
    ||||||||| ||| |||||||||||||||| |||||||||||    
T  52417812 tttcttttttatattcacattgtatttttactttctctctct 52417853  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 49021758 - 49021798
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctc 221  Q
    ||||||| ||||||||||||| |||||||||||| ||||||    
T  49021758 tttctttctcatactcacattatatttttattttgtctctc 49021798  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 9987998 - 9988040
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctctctcta 223  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||    
T  9987998 tttctctttcatactcacattatatttttactttctctctcta 9988040  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 33076174 - 33076208
Alignment:
Q  189 tcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||| |||||||||||||||||||||    
T  33076174 tcatactcacattatatttttattttctctctcta 33076208  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 2206238 - 2206201
Alignment:
Q  181 tttctttttcatactcacattgtatttttattttctct 218  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  2206238 tttctttttcatactcatattatatttttattttctct 2206201  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 41677343 - 41677307
Alignment:
Q  187 tttcatactcacattgtatttttattttctctctcta 223  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  41677343 tttcatactcacattatatttttattttatctctcta 41677307  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 11180332 - 11180393
Alignment:
Q  159 agaaataatatttgaacaattatttctttttcatactcacattgtatttttattttctctct 220  Q
    |||||| ||||||| ||| |||||||| | ||||||||||||| |||| ||||| |||||||    
T  11180332 agaaatgatatttgtacagttatttctctctcatactcacattatattcttattctctctct 11180393  T

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